Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids.mevalonate pathway.3-hydroxy-3-methylglutaryl-CoA synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Capsicum annuum PGAv.1.6.scaffold981 1 CH_can_414 2 2 0.000495663
Carya illinoinensis Chr12 1 CH_cil_519 2 3 0.000557817
Lonicera japonica GWHAAZE00000002 1 CH_lonja_291 3 13 0.0000061514
Petunia axillaris Peaxi162Scf00620 1 CH_pax_84 3 3 0.0000000742514
Populus trichocarpa Chr03 1 CH_ptr_479 2 3 0.000520176
Solanum tuberosum ST4.03ch08 1 CH_stu_528 2 2 0.000307472
Capsicum annuum PGAv.1.6.scaffold981 2 CH_can_414 2 2 0.000495663
Carya illinoinensis Chr12 2 CH_cil_519 2 3 0.000557817
Lonicera japonica GWHAAZE00000002 2 CH_lonja_291 3 13 0.0000061514
Petunia axillaris Peaxi162Scf00620 2 CH_pax_84 3 3 0.0000000742514
Populus trichocarpa Chr03 2 CH_ptr_479 2 3 0.000520176
Solanum tuberosum ST4.03ch08 2 CH_stu_528 2 2 0.000307472

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001