Functional clusters
Information
- Type MapMan
- Description Secondary metabolism.terpenoids.cycloartenol biosynthesis.squalene epoxidase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-11 | 1 | CH_aar_278 | 2 | 2 | 0.000912326 |
| Acer truncatum | chr2 | 1 | CH_acertr_140 | 3 | 3 | 0.0000001491 |
| Actinidia chinensis | Lachesis_group7 | 1 | CH_ach_275 | 2 | 2 | 0.000814819 |
| Arabidopsis lyrata | scaffold_6 | 1 | CH_aly_51 | 4 | 5 | 0.000000000150964 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_191 | 3 | 15 | 0.00000703908 |
| Brassica carinata | ChrB07 | 1 | CH_bca_312 | 3 | 3 | 0.000000383844 |
| Brassica napus | A02 | 1 | CH_bna_306 | 3 | 4 | 0.00000235376 |
| Carpinus fangiana | Cfa02 | 1 | CH_cfa_357 | 2 | 2 | 0.000454408 |
| Cardamine hirsuta | Chr6 | 1 | CH_chi_12 | 7 | 9 | 3.71099e-20 |
| Carya illinoinensis | Chr08 | 1 | CH_cil_125 | 4 | 4 | 0.000000000050012 |
| Capsella rubella | scaffold_6 | 1 | CH_cru_60 | 4 | 4 | 0.0000000000410454 |
| Davidia involucrata | GWHABJS00000005 | 1 | CH_din_145 | 3 | 3 | 0.000000450236 |
| Eutrema salsugineum | scaffold_6 | 1 | CH_esa_291 | 2 | 2 | 0.000456899 |
| Fragaria x ananassa | Fvb2-1 | 1 | CH_fan_10 | 6 | 6 | 3.59376e-17 |
| Fragaria x ananassa | Fvb2-3 | 1 | CH_fan_106 | 4 | 7 | 0.0000000209183 |
| Fragaria x ananassa | Fvb2-4 | 1 | CH_fan_130 | 5 | 38 | 0.0000000744698 |
| Fragaria x ananassa | Fvb2-2 | 1 | CH_fan_83 | 4 | 5 | 0.00000000298958 |
| Fragaria vesca | Fvb2 | 1 | CH_fve_49 | 5 | 12 | 0.000000000018012 |
| Gossypium hirsutum | A04 | 1 | CH_ghi_29 | 7 | 9 | 3.55535e-19 |
| Gossypium hirsutum | D04 | 1 | CH_ghi_55 | 6 | 7 | 2.87712e-16 |
| Glycine max | Gm04 | 1 | CH_gma_222 | 3 | 4 | 0.00000142607 |
| Gossypium raimondii | Chr12 | 1 | CH_gra_29 | 6 | 10 | 0.00000000000000193268 |
| Lotus japonicus | chr4 | 1 | CH_lja_171 | 3 | 4 | 0.00000107369 |
| Malus domestica | Chr05 | 1 | CH_mdo_23 | 6 | 6 | 4.78801e-17 |
| Malus domestica | Chr07 | 1 | CH_mdo_24 | 6 | 6 | 4.78801e-17 |
| Manihot esculenta | Chromosome10 | 1 | CH_mes_10 | 11 | 14 | 1.26667e-31 |
| Oryza sativa ssp. japonica | chr03 | 1 | CH_osa_259 | 2 | 3 | 0.000158433 |
| Prunus persica | Pp08 | 1 | CH_ppe_179 | 3 | 3 | 0.0000000834721 |
| Quercus lobata | 6 | 1 | CH_qlo_388 | 3 | 3 | 0.0000000399842 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_25 | 10 | 22 | 6.17224e-24 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_401 | 3 | 3 | 0.00000619815 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_532 | 4 | 31 | 0.000088522 |
| Rhododendron simsii | chr06 | 1 | CH_rsi_506 | 2 | 2 | 0.000387184 |
| Simmondsia chinensis | GWHAASQ00000003 | 1 | CH_sci_88 | 3 | 7 | 0.00000152196 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_170 | 3 | 5 | 0.000000206684 |
| Schrenkiella parvula | ch2-4 | 1 | CH_spa_306 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_528 | 2 | 4 | 0.000800563 |
| Theobroma cacao | Chromosome_1 | 1 | CH_tca_366 | 3 | 14 | 0.000245474 |
| Theobroma cacao | Chromosome_2 | 1 | CH_tca_85 | 4 | 4 | 0.000000000148511 |
| Tarenaya hassleriana | NW_010968505.1 | 1 | CH_tha_123 | 3 | 20 | 0.000166532 |
| Tripterygium wilfordii | NC_052249.1 | 1 | CH_twi_319 | 2 | 2 | 0.00083626 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_383 | 2 | 2 | 0.000557543 |
| Vitis vinifera | chr3 | 1 | CH_vvi_436 | 2 | 2 | 0.00076063 |
| Aethionema arabicum | LG-11 | 2 | CH_aar_278 | 2 | 2 | 0.000912326 |
| Acer truncatum | chr2 | 2 | CH_acertr_140 | 3 | 3 | 0.0000001491 |
| Actinidia chinensis | Lachesis_group7 | 2 | CH_ach_275 | 2 | 2 | 0.000814819 |
| Arabidopsis lyrata | scaffold_6 | 2 | CH_aly_51 | 4 | 5 | 0.000000000150964 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_191 | 3 | 15 | 0.00000703908 |
| Brassica carinata | ChrB07 | 2 | CH_bca_312 | 3 | 3 | 0.000000383844 |
| Carpinus fangiana | Cfa02 | 2 | CH_cfa_357 | 2 | 2 | 0.000454408 |
| Cardamine hirsuta | Chr6 | 2 | CH_chi_12 | 7 | 9 | 3.71099e-20 |
| Carya illinoinensis | Chr08 | 2 | CH_cil_125 | 4 | 4 | 0.000000000050012 |
| Capsella rubella | scaffold_6 | 2 | CH_cru_60 | 4 | 4 | 0.0000000000410454 |
| Davidia involucrata | GWHABJS00000005 | 2 | CH_din_145 | 3 | 3 | 0.000000450236 |
| Eucalyptus grandis | Chr06 | 2 | CH_egr_941 | 2 | 2 | 0.000877912 |
| Eutrema salsugineum | scaffold_6 | 2 | CH_esa_291 | 2 | 2 | 0.000456899 |
| Fragaria x ananassa | Fvb2-1 | 2 | CH_fan_10 | 6 | 6 | 3.59376e-17 |
| Fragaria x ananassa | Fvb2-3 | 2 | CH_fan_106 | 4 | 7 | 0.0000000209183 |
| Fragaria x ananassa | Fvb2-4 | 2 | CH_fan_130 | 5 | 38 | 0.0000000744698 |
| Fragaria x ananassa | Fvb2-2 | 2 | CH_fan_83 | 4 | 5 | 0.00000000298958 |
| Fragaria vesca | Fvb2 | 2 | CH_fve_49 | 5 | 12 | 0.000000000018012 |
| Gossypium hirsutum | A04 | 2 | CH_ghi_29 | 7 | 9 | 3.55535e-19 |
| Gossypium hirsutum | D04 | 2 | CH_ghi_55 | 6 | 7 | 2.87712e-16 |
| Glycine max | Gm04 | 2 | CH_gma_222 | 3 | 4 | 0.00000142607 |
| Gossypium raimondii | Chr12 | 2 | CH_gra_29 | 6 | 10 | 0.00000000000000193268 |
| Lotus japonicus | chr4 | 2 | CH_lja_171 | 3 | 4 | 0.00000107369 |
| Malus domestica | Chr05 | 2 | CH_mdo_23 | 6 | 6 | 4.78801e-17 |
| Malus domestica | Chr07 | 2 | CH_mdo_24 | 6 | 6 | 4.78801e-17 |
| Manihot esculenta | Chromosome10 | 2 | CH_mes_10 | 11 | 14 | 1.26667e-31 |
| Oryza sativa ssp. japonica | chr03 | 2 | CH_osa_259 | 2 | 3 | 0.000158433 |
| Prunus persica | Pp08 | 2 | CH_ppe_179 | 3 | 3 | 0.0000000834721 |
| Quercus lobata | 6 | 2 | CH_qlo_388 | 3 | 3 | 0.0000000399842 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_25 | 10 | 22 | 6.17224e-24 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_401 | 3 | 3 | 0.00000619815 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_532 | 4 | 31 | 0.000088522 |
| Rhododendron simsii | chr06 | 2 | CH_rsi_506 | 2 | 2 | 0.000387184 |
| Simmondsia chinensis | GWHAASQ00000003 | 2 | CH_sci_88 | 3 | 7 | 0.00000152196 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_170 | 3 | 5 | 0.000000206684 |
| Schrenkiella parvula | ch2-4 | 2 | CH_spa_306 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_528 | 2 | 4 | 0.000800563 |
| Theobroma cacao | Chromosome_1 | 2 | CH_tca_366 | 3 | 14 | 0.000245474 |
| Theobroma cacao | Chromosome_2 | 2 | CH_tca_85 | 4 | 4 | 0.000000000148511 |
| Tarenaya hassleriana | NW_010968505.1 | 2 | CH_tha_123 | 3 | 20 | 0.000166532 |
| Tripterygium wilfordii | NC_052249.1 | 2 | CH_twi_319 | 2 | 2 | 0.00083626 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_383 | 2 | 2 | 0.000557543 |
| Vitis vinifera | chr3 | 2 | CH_vvi_436 | 2 | 2 | 0.00076063 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |