Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids.mevalonate pathway.3-hydroxy-3-methylglutaryl-CoA reductase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Carya illinoinensis Chr06 1 CH_cil_496 2 2 0.000371897
Capsella rubella scaffold_3 1 CH_cru_339 2 2 0.000219346
Daucus carota DCARv2_Chr5 1 CH_dca_410 2 3 0.000573967
Fragaria x ananassa Fvb2-4 1 CH_fan_40 5 8 0.00000000000165607
Fragaria x ananassa Fvb2-2 1 CH_fan_73 4 5 0.000000000841388
Fragaria x ananassa Fvb2-1 1 CH_fan_89 4 7 0.00000000588795
Fragaria vesca Fvb2 1 CH_fve_33 5 7 0.0000000000000398354
Gossypium hirsutum A03 1 CH_ghi_135 4 4 0.000000000174771
Gossypium hirsutum D02 1 CH_ghi_136 4 4 0.000000000174771
Gossypium raimondii Chr05 1 CH_gra_74 4 4 0.000000000058248
Helianthus annuus HanXRQChr17 1 CH_han_700 2 2 0.000579643
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_198 3 3 0.000000221936
Medicago truncatula chr5 1 CH_mtr_88 5 6 0.000000000000016158
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_50 7 26 7.47983e-18
Salvia bowleyana GWHASIU00000003 1 CH_sbo_488 2 2 0.000955457
Salvia bowleyana GWHASIU00000003 1 CH_sbo_489 2 2 0.000955457
Sequoiadendron giganteum chr6 1 CH_sgi_164 5 7 0.00000000000000532246
Solanum pennellii Spenn-ch03 1 CH_spe_486 2 2 0.00044479
Trifolium pratense Tp57577_TGAC_v2_LG3 1 CH_tpr_103 3 3 0.000000171909
Carya illinoinensis Chr06 2 CH_cil_496 2 2 0.000371897
Capsella rubella scaffold_3 2 CH_cru_339 2 2 0.000219346
Daucus carota DCARv2_Chr5 2 CH_dca_410 2 3 0.000573967
Eucalyptus grandis Chr07 2 CH_egr_487 3 3 0.000000287747
Fragaria x ananassa Fvb2-4 2 CH_fan_40 5 8 0.00000000000165607
Fragaria x ananassa Fvb2-2 2 CH_fan_73 4 5 0.000000000841388
Fragaria x ananassa Fvb2-1 2 CH_fan_89 4 7 0.00000000588795
Fragaria vesca Fvb2 2 CH_fve_33 5 7 0.0000000000000398354
Gossypium hirsutum A03 2 CH_ghi_135 4 4 0.000000000174771
Gossypium hirsutum D02 2 CH_ghi_136 4 4 0.000000000174771
Gossypium raimondii Chr05 2 CH_gra_74 4 4 0.000000000058248
Helianthus annuus HanXRQChr17 2 CH_han_700 2 2 0.000579643
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_198 3 3 0.000000221936
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_50 7 26 7.47983e-18
Salvia bowleyana GWHASIU00000003 2 CH_sbo_488 2 2 0.000955457
Salvia bowleyana GWHASIU00000003 2 CH_sbo_489 2 2 0.000955457
Sequoiadendron giganteum chr6 2 CH_sgi_164 5 7 0.00000000000000532246
Solanum pennellii Spenn-ch03 2 CH_spe_486 2 2 0.00044479
Trifolium pratense Tp57577_TGAC_v2_LG3 2 CH_tpr_103 3 3 0.000000171909

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001