Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.phenolics.flavonoid biosynthesis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Populus trichocarpa Chr01 1 CH_ptr_245 4 5 0.00000332762
Salix brachista GWHAAZH00000001 1 CH_sbr_140 4 6 0.00000113817
Populus trichocarpa Chr01 2 CH_ptr_245 4 5 0.00000332762
Salix brachista GWHAAZH00000001 2 CH_sbr_140 4 6 0.00000113817

Available child term results

Ontology identifier Description Number of clusters
9.2.2.1.1 Secondary metabolism.phenolics.flavonoid biosynthesis.polyketide/acetate pathway.enoyl-CoA hydratase (ECH) 5
9.2.2.1.2 Secondary metabolism.phenolics.flavonoid biosynthesis.polyketide/acetate pathway.hydroxyacyl-CoA dehydrogenase (HCD) 5
9.2.2.1.3 Secondary metabolism.phenolics.flavonoid biosynthesis.polyketide/acetate pathway.3-ketoacyl-CoA thiolase (KAT) 2
9.2.2.1.4 Secondary metabolism.phenolics.flavonoid biosynthesis.polyketide/acetate pathway.acetyl-CoA carboxylase (ACC) 9
9.2.2.10.1 Secondary metabolism.phenolics.flavonoid biosynthesis.anthocyanidins.dihydroflavonol 4-reductase 31
9.2.2.10.2 Secondary metabolism.phenolics.flavonoid biosynthesis.anthocyanidins.anthocyanidin synthase 8
9.2.2.10.3 Secondary metabolism.phenolics.flavonoid biosynthesis.anthocyanidins.anthocyanidin reductase 8
9.2.2.10.4 Secondary metabolism.phenolics.flavonoid biosynthesis.anthocyanidins.leucoanthocyanidin reductase 3
9.2.2.2.1.1 Secondary metabolism.phenolics.flavonoid biosynthesis.chalcones.chalcone synthase activity.chalcone synthase (CHS) 97
9.2.2.2.1.2 Secondary metabolism.phenolics.flavonoid biosynthesis.chalcones.chalcone synthase activity.regulatory substrate adaptor of SCF ubiquitin ligase (KFB-CHS) 17
9.2.2.3.1 Secondary metabolism.phenolics.flavonoid biosynthesis.flavanones.chalcone isomerase 48
9.2.2.4.1 Secondary metabolism.phenolics.flavonoid biosynthesis.flavones.type-I flavone synthase 7
9.2.2.4.2 Secondary metabolism.phenolics.flavonoid biosynthesis.flavones.type-II flavone synthase 11
9.2.2.5.1 Secondary metabolism.phenolics.flavonoid biosynthesis.dihydroflavonols.flavonoid 3'-hydroxylase 17
9.2.2.5.2 Secondary metabolism.phenolics.flavonoid biosynthesis.dihydroflavonols.flavonoid 3',5'-hydroxylase 2
9.2.2.5.3 Secondary metabolism.phenolics.flavonoid biosynthesis.dihydroflavonols.flavanone 3-hydroxylase 22
9.2.2.6.1 Secondary metabolism.phenolics.flavonoid biosynthesis.flavonols.flavonol synthase 80
9.2.2.7 Secondary metabolism.phenolics.flavonoid biosynthesis.flavonol glycosides 4
9.2.2.7.1 Secondary metabolism.phenolics.flavonoid biosynthesis.flavonol glycosides.flavonol 3-O-glycosyltransferase 135
9.2.2.7.2 Secondary metabolism.phenolics.flavonoid biosynthesis.flavonol glycosides.flavonol-3-O-rhamnosyltransferase 73
9.2.2.7.3 Secondary metabolism.phenolics.flavonoid biosynthesis.flavonol glycosides.flavonol-3-O-glycoside rhamnosyltransferase 72
9.2.2.8.1 Secondary metabolism.phenolics.flavonoid biosynthesis.aurones.aureusidin synthase 147
9.2.2.9.1 Secondary metabolism.phenolics.flavonoid biosynthesis.isoflavonoids.isoflavone synthase 54
9.2.2.9.2 Secondary metabolism.phenolics.flavonoid biosynthesis.isoflavonoids.2-hydroxyisoflavanone dehydratase 53
9.2.2.9.3 Secondary metabolism.phenolics.flavonoid biosynthesis.isoflavonoids.isoflavone 2'-hydroxylase 10
9.2.2.9.4 Secondary metabolism.phenolics.flavonoid biosynthesis.isoflavonoids.isoflavone-7-O-methyltransferase 14
9.2.2.9.5 Secondary metabolism.phenolics.flavonoid biosynthesis.isoflavonoids.isoflavone reductase 5

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001