Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids.isoprenyl diphosphate biosynthesis.farnesyl diphosphate synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Corylus avellana 2 1 CH_cav_456 2 3 0.000689981
Ceratophyllum demersum 8 1 CH_cde_197 2 2 0.000236939
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_466 2 2 0.000448722
Sequoiadendron giganteum chr3 1 CH_sgi_252 4 4 0.00000000000173426
Solanum lycopersicum SL4.0ch10 1 CH_sly_509 2 3 0.000528221
Solanum pennellii Spenn-ch10 1 CH_spe_469 2 3 0.000400297
Solanum tuberosum ST4.03ch10 1 CH_stu_476 2 2 0.000153736
Selenicereus undatus Scaffold_33680 1 CH_sun_43 3 6 0.00000015839
Vanilla planifolia CM028161.1 1 CH_vpl_196 2 2 0.000073888
Corylus avellana 2 2 CH_cav_456 2 3 0.000689981
Ceratophyllum demersum 8 2 CH_cde_197 2 2 0.000236939
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_466 2 2 0.000448722
Eucalyptus grandis Chr05 2 CH_egr_703 2 2 0.0000585274
Sequoiadendron giganteum chr3 2 CH_sgi_252 4 4 0.00000000000173426
Solanum lycopersicum SL4.0ch10 2 CH_sly_509 2 3 0.000528221
Solanum pennellii Spenn-ch10 2 CH_spe_469 2 3 0.000400297
Solanum tuberosum ST4.03ch10 2 CH_stu_476 2 2 0.000153736
Selenicereus undatus Scaffold_33680 2 CH_sun_43 3 6 0.00000015839
Vanilla planifolia CM028161.1 2 CH_vpl_196 2 2 0.000073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001