Functional clusters

Information

  • Type Gene Ontology
  • Description cellular component organization or biogenesis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr5 3 CH_ath_478 13 32 0.000204464
Brassica rapa A02 3 CH_bra_149 10 12 0.0000157216
Cicer arietinum L. Ca_LG5_v3 3 CH_car_98 24 74 0.0000692222
Coffea canephora chr2 3 CH_ccan_392 7 46 0.000766725
Chenopodium quinoa C_Quinoa_Scaffold_4257 3 CH_cqu_212 21 45 0.00000140834
Chenopodium quinoa C_Quinoa_Scaffold_4077 3 CH_cqu_455 19 48 0.000363795
Malus domestica Chr07 3 CH_mdo_511 20 64 0.000141718
Malus domestica Chr01 3 CH_mdo_736 18 58 0.000988769
Salvia bowleyana GWHASIU00000007 3 CH_sbo_231 18 51 0.00000139496
Simmondsia chinensis GWHAASQ00000018 3 CH_sci_235 9 11 0.000426741
Sequoiadendron giganteum chr9 3 CH_sgi_658 15 26 0.000000277966
Trifolium pratense Tp57577_TGAC_v2_LG1 3 CH_tpr_187 12 19 0.0000394371
Vanilla planifolia CM028156.1 3 CH_vpl_230 12 19 0.000117653
Arabidopsis thaliana Chr5 4 CH_ath_478 13 32 0.000204464
Brassica rapa A02 4 CH_bra_149 10 12 0.0000157216
Cicer arietinum L. Ca_LG5_v3 4 CH_car_98 24 74 0.0000692222
Coffea canephora chr2 4 CH_ccan_392 7 46 0.000766725
Chenopodium quinoa C_Quinoa_Scaffold_4257 4 CH_cqu_212 21 45 0.00000140834
Chenopodium quinoa C_Quinoa_Scaffold_4077 4 CH_cqu_455 19 48 0.000363795
Malus domestica Chr07 4 CH_mdo_511 20 64 0.000141718
Malus domestica Chr01 4 CH_mdo_736 18 58 0.000988769
Salvia bowleyana GWHASIU00000007 4 CH_sbo_231 18 51 0.00000139496
Simmondsia chinensis GWHAASQ00000018 4 CH_sci_235 9 11 0.000426741
Sequoiadendron giganteum chr9 4 CH_sgi_658 15 26 0.000000277966
Trifolium pratense Tp57577_TGAC_v2_LG1 4 CH_tpr_187 12 19 0.0000394371
Vanilla planifolia CM028156.1 4 CH_vpl_230 12 19 0.000117653

Available child term results

Ontology identifier Description Number of clusters
GO:0000002 mitochondrial genome maintenance 2
GO:0000027 ribosomal large subunit assembly 6
GO:0000028 ribosomal small subunit assembly 12
GO:0000032 cell wall mannoprotein biosynthetic process 2
GO:0000055 ribosomal large subunit export from nucleus 38
GO:0000056 ribosomal small subunit export from nucleus 22
GO:0000132 establishment of mitotic spindle orientation 2
GO:0000154 rRNA modification 10
GO:0000183 rDNA heterochromatin assembly 16
GO:0000212 meiotic spindle organization 4
GO:0000226 microtubule cytoskeleton organization 2
GO:0000244 spliceosomal tri-snRNP complex assembly 20
GO:0000245 spliceosomal complex assembly 24
GO:0000266 mitochondrial fission 4
GO:0000280 nuclear division 2
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0000354 cis assembly of pre-catalytic spliceosome 2
GO:0000387 spliceosomal snRNP assembly 2
GO:0000395 mRNA 5'-splice site recognition 2
GO:0000422 autophagy of mitochondrion 16
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 16
GO:0000469 cleavage involved in rRNA processing 2
GO:0000481 maturation of 5S rRNA 2
GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 2
GO:0000492 box C/D snoRNP assembly 6
GO:0000493 box H/ACA snoRNP assembly 6
GO:0000712 resolution of meiotic recombination intermediates 2
GO:0000723 telomere maintenance 10
GO:0000741 karyogamy 10
GO:0000819 sister chromatid segregation 2
GO:0000913 preprophase band assembly 2
GO:0000914 phragmoplast assembly 20
GO:0001188 RNA polymerase I preinitiation complex assembly 8
GO:0001558 regulation of cell growth 6
GO:0001731 formation of translation preinitiation complex 14
GO:0001778 plasma membrane repair 8
GO:0002103 endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 4
GO:0006265 DNA topological change 2
GO:0006268 DNA unwinding involved in DNA replication 2
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006325 chromatin organization 4
GO:0006334 nucleosome assembly 46
GO:0006335 DNA replication-dependent nucleosome assembly 12
GO:0006336 DNA replication-independent nucleosome assembly 16
GO:0006337 nucleosome disassembly 2
GO:0006338 chromatin remodeling 4
GO:0006342 chromatin silencing 16
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006348 chromatin silencing at telomere 6
GO:0006364 rRNA processing 10
GO:0006376 mRNA splice site selection 8
GO:0006415 translational termination 12
GO:0006625 protein targeting to peroxisome 2
GO:0006627 protein processing involved in protein targeting to mitochondrion 4
GO:0006996 organelle organization 8
GO:0006997 nucleus organization 16
GO:0007000 nucleolus organization 2
GO:0007004 telomere maintenance via telomerase 2
GO:0007005 mitochondrion organization 6
GO:0007009 plasma membrane organization 6
GO:0007010 cytoskeleton organization 6
GO:0007015 actin filament organization 2
GO:0007019 microtubule depolymerization 8
GO:0007021 tubulin complex assembly 12
GO:0007029 endoplasmic reticulum organization 42
GO:0007030 Golgi organization 8
GO:0007031 peroxisome organization 2
GO:0007033 vacuole organization 2
GO:0007043 cell-cell junction assembly 38
GO:0007051 spindle organization 2
GO:0007060 male meiosis chromosome segregation 4
GO:0007064 mitotic sister chromatid cohesion 50
GO:0007065 male meiosis sister chromatid cohesion 4
GO:0007076 mitotic chromosome condensation 6
GO:0007094 mitotic spindle assembly checkpoint signaling 8
GO:0007096 regulation of exit from mitosis 2
GO:0007130 synaptonemal complex assembly 4
GO:0007131 reciprocal meiotic recombination 8
GO:0007135 meiosis II 6
GO:0007140 male meiotic nuclear division 2
GO:0007141 male meiosis I 4
GO:0007142 male meiosis II 6
GO:0007143 female meiotic nuclear division 2
GO:0008154 actin polymerization or depolymerization 2
GO:0009657 plastid organization 4
GO:0009658 chloroplast organization 2
GO:0009662 etioplast organization 2
GO:0009664 plant-type cell wall organization 56
GO:0009667 plastid inner membrane organization 2
GO:0009827 plant-type cell wall modification 4
GO:0009828 plant-type cell wall loosening 6
GO:0009829 cell wall modification involved in fruit ripening 2
GO:0009830 cell wall modification involved in abscission 10
GO:0009831 plant-type cell wall modification involved in multidimensional cell growth 4
GO:0009832 plant-type cell wall biogenesis 22
GO:0009833 plant-type primary cell wall biogenesis 4
GO:0009834 plant-type secondary cell wall biogenesis 66
GO:0009904 chloroplast accumulation movement 2
GO:0009969 xyloglucan biosynthetic process 4
GO:0009992 cellular water homeostasis 24
GO:0010020 chloroplast fission 4
GO:0010027 thylakoid membrane organization 2
GO:0010111 glyoxysome organization 10
GO:0010190 cytochrome b6f complex assembly 2
GO:0010197 polar nucleus fusion 28
GO:0010215 cellulose microfibril organization 72
GO:0010256 endomembrane system organization 2
GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly 2
GO:0010265 SCF complex assembly 12
GO:0010270 photosystem II oxygen evolving complex assembly 8
GO:0010275 NAD(P)H dehydrogenase complex assembly 2
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010324 membrane invagination 50
GO:0010387 COP9 signalosome assembly 14
GO:0010390 histone monoubiquitination 20
GO:0010400 rhamnogalacturonan I side chain metabolic process 2
GO:0010401 pectic galactan metabolic process 4
GO:0010417 glucuronoxylan biosynthetic process 2
GO:0010584 pollen exine formation 8
GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly 16
GO:0010777 meiotic mismatch repair involved in reciprocal meiotic recombination 8
GO:0010789 meiotic sister chromatid cohesion involved in meiosis I 2
GO:0010845 positive regulation of reciprocal meiotic recombination 2
GO:0010964 regulation of heterochromatin assembly by small RNA 4
GO:0010968 regulation of microtubule nucleation 20
GO:0016043 cellular component organization 16
GO:0016226 iron-sulfur cluster assembly 20
GO:0016233 telomere capping 2
GO:0016560 protein import into peroxisome matrix, docking 12
GO:0016569 covalent chromatin modification 2
GO:0016573 histone acetylation 4
GO:0016575 histone deacetylation 8
GO:0016584 nucleosome positioning 2
GO:0017004 cytochrome complex assembly 30
GO:0017121 plasma membrane phospholipid scrambling 10
GO:0017126 nucleologenesis 4
GO:0018283 iron incorporation into metallo-sulfur cluster 6
GO:0022607 cellular component assembly 2
GO:0022613 ribonucleoprotein complex biogenesis 4
GO:0030036 actin cytoskeleton organization 2
GO:0030042 actin filament depolymerization 14
GO:0030071 regulation of mitotic metaphase/anaphase transition 20
GO:0030150 protein import into mitochondrial matrix 6
GO:0030261 chromosome condensation 20
GO:0030833 regulation of actin filament polymerization 10
GO:0030865 cortical cytoskeleton organization 16
GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity 20
GO:0031023 microtubule organizing center organization 10
GO:0031109 microtubule polymerization or depolymerization 6
GO:0031116 positive regulation of microtubule polymerization 4
GO:0031117 positive regulation of microtubule depolymerization 10
GO:0031508 pericentric heterochromatin assembly 18
GO:0031848 protection from non-homologous end joining at telomere 2
GO:0031935 regulation of chromatin silencing 8
GO:0031937 positive regulation of chromatin silencing 14
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032508 DNA duplex unwinding 12
GO:0032790 ribosome disassembly 2
GO:0032889 regulation of vacuole fusion, non-autophagic 2
GO:0032955 regulation of division septum assembly 24
GO:0032981 mitochondrial respiratory chain complex I assembly 6
GO:0032984 protein-containing complex disassembly 4
GO:0033043 regulation of organelle organization 2
GO:0033184 positive regulation of histone ubiquitination 4
GO:0033316 meiotic spindle assembly checkpoint signaling 2
GO:0033523 histone H2B ubiquitination 2
GO:0033614 chloroplast proton-transporting ATP synthase complex assembly 6
GO:0033617 mitochondrial cytochrome c oxidase assembly 4
GO:0034063 stress granule assembly 4
GO:0034080 CENP-A containing nucleosome assembly 4
GO:0034089 establishment of meiotic sister chromatid cohesion 2
GO:0034090 maintenance of meiotic sister chromatid cohesion 8
GO:0034203 glycolipid translocation 2
GO:0034214 protein hexamerization 4
GO:0034314 Arp2/3 complex-mediated actin nucleation 12
GO:0034389 lipid droplet organization 20
GO:0034462 small-subunit processome assembly 2
GO:0034508 centromere complex assembly 2
GO:0034553 mitochondrial respiratory chain complex II assembly 2
GO:0034622 cellular protein-containing complex assembly 6
GO:0034720 histone H3-K4 demethylation 8
GO:0034968 histone lysine methylation 2
GO:0034970 histone H3-R2 methylation 2
GO:0035065 regulation of histone acetylation 6
GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA 4
GO:0035407 histone H3-T11 phosphorylation 6
GO:0035494 SNARE complex disassembly 32
GO:0035616 histone H2B conserved C-terminal lysine deubiquitination 2
GO:0035721 intraciliary retrograde transport 2
GO:0036123 histone H3-K9 dimethylation 2
GO:0036257 multivesicular body organization 2
GO:0036258 multivesicular body assembly 4
GO:0036292 DNA rewinding 4
GO:0040020 regulation of meiotic nuclear division 2
GO:0042254 ribosome biogenesis 22
GO:0042255 ribosome assembly 2
GO:0042256 mature ribosome assembly 14
GO:0042273 ribosomal large subunit biogenesis 4
GO:0042407 cristae formation 4
GO:0042545 cell wall modification 14
GO:0042547 cell wall modification involved in multidimensional cell growth 42
GO:0043044 ATP-dependent chromatin remodeling 24
GO:0043244 regulation of protein-containing complex disassembly 2
GO:0043247 telomere maintenance in response to DNA damage 8
GO:0043248 proteasome assembly 16
GO:0043254 regulation of protein-containing complex assembly 2
GO:0043461 proton-transporting ATP synthase complex assembly 6
GO:0043486 histone exchange 14
GO:0043622 cortical microtubule organization 12
GO:0043933 protein-containing complex subunit organization 16
GO:0043967 histone H4 acetylation 6
GO:0043968 histone H2A acetylation 10
GO:0043970 histone H3-K9 acetylation 4
GO:0043971 histone H3-K18 acetylation 56
GO:0043981 histone H4-K5 acetylation 2
GO:0043984 histone H4-K16 acetylation 2
GO:0043985 histone H4-R3 methylation 2
GO:0043987 histone H3-S10 phosphorylation 2
GO:0044085 cellular component biogenesis 2
GO:0044571 [2Fe-2S] cluster assembly 4
GO:0045010 actin nucleation 2
GO:0045040 protein insertion into mitochondrial outer membrane 14
GO:0045048 protein insertion into ER membrane 4
GO:0045143 homologous chromosome segregation 4
GO:0045229 external encapsulating structure organization 6
GO:0045492 xylan biosynthetic process 18
GO:0045792 negative regulation of cell size 6
GO:0045793 positive regulation of cell size 20
GO:0045839 negative regulation of mitotic nuclear division 4
GO:0045841 negative regulation of mitotic metaphase/anaphase transition 2
GO:0045876 positive regulation of sister chromatid cohesion 10
GO:0045905 positive regulation of translational termination 2
GO:0048041 focal adhesion assembly 4
GO:0048208 COPII vesicle coating 56
GO:0048280 vesicle fusion with Golgi apparatus 8
GO:0048312 intracellular distribution of mitochondria 4
GO:0048564 photosystem I assembly 6
GO:0051013 microtubule severing 4
GO:0051017 actin filament bundle assembly 14
GO:0051123 RNA polymerase II preinitiation complex assembly 12
GO:0051127 positive regulation of actin nucleation 2
GO:0051128 regulation of cellular component organization 6
GO:0051131 chaperone-mediated protein complex assembly 12
GO:0051177 meiotic sister chromatid cohesion 2
GO:0051205 protein insertion into membrane 2
GO:0051259 protein complex oligomerization 30
GO:0051260 protein homooligomerization 12
GO:0051276 chromosome organization 4
GO:0051290 protein heterotetramerization 16
GO:0051315 attachment of mitotic spindle microtubules to kinetochore 4
GO:0051382 kinetochore assembly 4
GO:0051455 monopolar spindle attachment to meiosis I kinetochore 2
GO:0051469 vesicle fusion with vacuole 2
GO:0051510 regulation of unidimensional cell growth 2
GO:0051511 negative regulation of unidimensional cell growth 8
GO:0051512 positive regulation of unidimensional cell growth 2
GO:0051513 regulation of monopolar cell growth 12
GO:0051571 positive regulation of histone H3-K4 methylation 8
GO:0051572 negative regulation of histone H3-K4 methylation 2
GO:0051573 negative regulation of histone H3-K9 methylation 2
GO:0051639 actin filament network formation 2
GO:0051754 meiotic sister chromatid cohesion, centromeric 6
GO:0051783 regulation of nuclear division 2
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0052386 cell wall thickening 2
GO:0052543 callose deposition in cell wall 4
GO:0055047 generative cell mitosis 2
GO:0060271 cilium assembly 8
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061024 membrane organization 2
GO:0061025 membrane fusion 2
GO:0061780 mitotic cohesin loading 18
GO:0061866 negative regulation of histone H3-S10 phosphorylation 2
GO:0061936 fusion of sperm to egg plasma membrane involved in double fertilization forming a zygote and endosperm 6
GO:0065003 protein-containing complex assembly 2
GO:0070071 proton-transporting two-sector ATPase complex assembly 2
GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly 2
GO:0070192 chromosome organization involved in meiotic cell cycle 2
GO:0070544 histone H3-K36 demethylation 4
GO:0070592 cell wall polysaccharide biosynthetic process 4
GO:0070676 intralumenal vesicle formation 2
GO:0070682 proteasome regulatory particle assembly 6
GO:0070829 heterochromatin maintenance 4
GO:0070897 transcription preinitiation complex assembly 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0070932 histone H3 deacetylation 2
GO:0071103 DNA conformation change 2
GO:0071555 cell wall organization 28
GO:0071562 nucleus-vacuole junction assembly 2
GO:0071668 plant-type cell wall assembly 2
GO:0071784 endoplasmic reticulum cisternal network assembly 10
GO:0071786 endoplasmic reticulum tubular network organization 2
GO:0080110 sporopollenin biosynthetic process 4
GO:0080119 ER body organization 4
GO:0080171 lytic vacuole organization 4
GO:0090063 positive regulation of microtubule nucleation 4
GO:0090069 regulation of ribosome biogenesis 4
GO:0090070 positive regulation of ribosome biogenesis 6
GO:0090114 COPII-coated vesicle budding 2
GO:0090143 nucleoid organization 8
GO:0090153 regulation of sphingolipid biosynthetic process 2
GO:0090158 endoplasmic reticulum membrane organization 44
GO:0090173 regulation of synaptonemal complex assembly 6
GO:0090241 negative regulation of histone H4 acetylation 2
GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint 2
GO:0090306 meiotic spindle assembly 8
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:0090522 vesicle tethering involved in exocytosis 26
GO:0090602 sieve element enucleation 4
GO:0097250 mitochondrial respirasome assembly 6
GO:0097298 regulation of nucleus size 4
GO:0097753 membrane bending 4
GO:0098532 histone H3-K27 trimethylation 4
GO:0099022 vesicle tethering 4
GO:0110102 ribulose bisphosphate carboxylase complex assembly 56
GO:0120009 intermembrane lipid transfer 20
GO:0140013 meiotic nuclear division 2
GO:0140014 mitotic nuclear division 8
GO:0140042 lipid droplet formation 2
GO:1900064 positive regulation of peroxisome organization 2
GO:1900109 regulation of histone H3-K9 dimethylation 4
GO:1900186 negative regulation of clathrin-dependent endocytosis 8
GO:1901347 negative regulation of secondary cell wall biogenesis 8
GO:1901651 regulation of mitotic chromosome decondensation 8
GO:1901673 regulation of mitotic spindle assembly 12
GO:1902066 regulation of cell wall pectin metabolic process 4
GO:1902464 regulation of histone H3-K27 trimethylation 8
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902892 positive regulation of root hair elongation 2
GO:1903099 positive regulation of CENP-A containing nucleosome assembly 6
GO:1903259 exon-exon junction complex disassembly 6
GO:1903527 positive regulation of membrane tubulation 2
GO:1904821 chloroplast disassembly 6
GO:1905037 autophagosome organization 4
GO:1905435 regulation of histone H3-K4 trimethylation 4
GO:1905499 trichome papilla formation 8
GO:1905515 non-motile cilium assembly 2
GO:1905775 negative regulation of DNA helicase activity 6
GO:1990019 protein storage vacuole organization 2
GO:1990164 histone H2A phosphorylation 8
GO:1990918 double-strand break repair involved in meiotic recombination 2
GO:2000232 regulation of rRNA processing 10
GO:2000234 positive regulation of rRNA processing 8
GO:2000369 regulation of clathrin-dependent endocytosis 2
GO:2000617 positive regulation of histone H3-K9 acetylation 2
GO:2000652 regulation of secondary cell wall biogenesis 8
GO:2000694 regulation of phragmoplast microtubule organization 2
GO:2000711 positive regulation of maintenance of meiotic sister chromatid cohesion, centromeric 2
GO:2000786 positive regulation of autophagosome assembly 2
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4
GO:2001253 regulation of histone H3-K36 trimethylation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001