Functional clusters

Information

  • Type Gene Ontology
  • Description chromatin organization

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Micromonas commoda Chr_01 3 CH_mco_9 4 4 0.000129514
Solanum pennellii Spenn-ch11 3 CH_spe_243 7 27 0.0000177899
Micromonas commoda Chr_01 4 CH_mco_9 4 4 0.000129514
Solanum pennellii Spenn-ch11 4 CH_spe_243 7 27 0.0000177899

Available child term results

Ontology identifier Description Number of clusters
GO:0000183 rDNA heterochromatin assembly 16
GO:0006334 nucleosome assembly 46
GO:0006335 DNA replication-dependent nucleosome assembly 12
GO:0006336 DNA replication-independent nucleosome assembly 16
GO:0006337 nucleosome disassembly 2
GO:0006338 chromatin remodeling 4
GO:0006342 chromatin silencing 16
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006348 chromatin silencing at telomere 6
GO:0010390 histone monoubiquitination 20
GO:0010964 regulation of heterochromatin assembly by small RNA 4
GO:0016569 covalent chromatin modification 2
GO:0016573 histone acetylation 4
GO:0016575 histone deacetylation 8
GO:0016584 nucleosome positioning 2
GO:0031508 pericentric heterochromatin assembly 18
GO:0031935 regulation of chromatin silencing 8
GO:0031937 positive regulation of chromatin silencing 14
GO:0033184 positive regulation of histone ubiquitination 4
GO:0033523 histone H2B ubiquitination 2
GO:0034080 CENP-A containing nucleosome assembly 4
GO:0034720 histone H3-K4 demethylation 8
GO:0034968 histone lysine methylation 2
GO:0034970 histone H3-R2 methylation 2
GO:0035065 regulation of histone acetylation 6
GO:0035407 histone H3-T11 phosphorylation 6
GO:0035616 histone H2B conserved C-terminal lysine deubiquitination 2
GO:0036123 histone H3-K9 dimethylation 2
GO:0043044 ATP-dependent chromatin remodeling 24
GO:0043486 histone exchange 14
GO:0043967 histone H4 acetylation 6
GO:0043968 histone H2A acetylation 10
GO:0043970 histone H3-K9 acetylation 4
GO:0043971 histone H3-K18 acetylation 56
GO:0043981 histone H4-K5 acetylation 2
GO:0043984 histone H4-K16 acetylation 2
GO:0043985 histone H4-R3 methylation 2
GO:0043987 histone H3-S10 phosphorylation 2
GO:0051571 positive regulation of histone H3-K4 methylation 8
GO:0051572 negative regulation of histone H3-K4 methylation 2
GO:0051573 negative regulation of histone H3-K9 methylation 2
GO:0061866 negative regulation of histone H3-S10 phosphorylation 2
GO:0070544 histone H3-K36 demethylation 4
GO:0070829 heterochromatin maintenance 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0070932 histone H3 deacetylation 2
GO:0090241 negative regulation of histone H4 acetylation 2
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:0098532 histone H3-K27 trimethylation 4
GO:1900109 regulation of histone H3-K9 dimethylation 4
GO:1902464 regulation of histone H3-K27 trimethylation 8
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1903099 positive regulation of CENP-A containing nucleosome assembly 6
GO:1905435 regulation of histone H3-K4 trimethylation 4
GO:1990164 histone H2A phosphorylation 8
GO:2000617 positive regulation of histone H3-K9 acetylation 2
GO:2001253 regulation of histone H3-K36 trimethylation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001