Functional clusters
Information
- Type Gene Ontology
- Description plant-type cell wall biogenesis
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr2 | 3 | CH_camsi_836 | 4 | 9 | 0.00083134 |
| Fragaria x ananassa | Fvb6-2 | 3 | CH_fan_426 | 4 | 7 | 0.000212812 |
| Fragaria x ananassa | Fvb6-3 | 3 | CH_fan_466 | 4 | 8 | 0.000424694 |
| Fragaria x ananassa | Fvb6-1 | 3 | CH_fan_467 | 4 | 8 | 0.000424694 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_271 | 4 | 7 | 0.000118539 |
| Glycine max | Gm18 | 3 | CH_gma_259 | 4 | 4 | 0.0000196313 |
| Medicago truncatula | chr7 | 3 | CH_mtr_762 | 3 | 3 | 0.000885007 |
| Sechium edule | LG06 | 3 | CH_sed_184 | 4 | 5 | 0.0000808021 |
| Selenicereus undatus | Scaffold_33677 | 3 | CH_sun_177 | 4 | 8 | 0.000338492 |
| Theobroma cacao | Chromosome_4 | 3 | CH_tca_371 | 4 | 8 | 0.000505903 |
| Vigna mungo | CM024070.1 | 3 | CH_vmu_130 | 4 | 4 | 0.00000559542 |
| Camellia sinensis var. sinensis | Chr2 | 4 | CH_camsi_836 | 4 | 9 | 0.00083134 |
| Fragaria x ananassa | Fvb6-2 | 4 | CH_fan_426 | 4 | 7 | 0.000212812 |
| Fragaria x ananassa | Fvb6-3 | 4 | CH_fan_466 | 4 | 8 | 0.000424694 |
| Fragaria x ananassa | Fvb6-1 | 4 | CH_fan_467 | 4 | 8 | 0.000424694 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_271 | 4 | 7 | 0.000118539 |
| Glycine max | Gm18 | 4 | CH_gma_259 | 4 | 4 | 0.0000196313 |
| Medicago truncatula | chr7 | 4 | CH_mtr_762 | 3 | 3 | 0.000885007 |
| Sechium edule | LG06 | 4 | CH_sed_184 | 4 | 5 | 0.0000808021 |
| Selenicereus undatus | Scaffold_33677 | 4 | CH_sun_177 | 4 | 8 | 0.000338492 |
| Theobroma cacao | Chromosome_4 | 4 | CH_tca_371 | 4 | 8 | 0.000505903 |
| Vigna mungo | CM024070.1 | 4 | CH_vmu_130 | 4 | 4 | 0.00000559542 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009833 | plant-type primary cell wall biogenesis | 4 |
| GO:0009834 | plant-type secondary cell wall biogenesis | 66 |
| GO:0010215 | cellulose microfibril organization | 72 |
| GO:0010306 | rhamnogalacturonan II biosynthetic process | 6 |
| GO:0052324 | plant-type cell wall cellulose biosynthetic process | 12 |
| GO:0071668 | plant-type cell wall assembly | 2 |
| GO:1901347 | negative regulation of secondary cell wall biogenesis | 8 |
| GO:2000652 | regulation of secondary cell wall biogenesis | 8 |
| GO:2001011 | positive regulation of plant-type cell wall cellulose biosynthetic process | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |