Functional clusters

Information

  • Type Gene Ontology
  • Description ribonucleoprotein complex biogenesis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Davidia involucrata GWHABJS00000007 3 CH_din_379 8 79 0.000512107
Vitis vinifera chr7 3 CH_vvi_282 9 74 0.0000819975
Davidia involucrata GWHABJS00000007 4 CH_din_379 8 79 0.000512107
Vitis vinifera chr7 4 CH_vvi_282 9 74 0.0000819975

Available child term results

Ontology identifier Description Number of clusters
GO:0000027 ribosomal large subunit assembly 6
GO:0000028 ribosomal small subunit assembly 12
GO:0000055 ribosomal large subunit export from nucleus 38
GO:0000056 ribosomal small subunit export from nucleus 22
GO:0000154 rRNA modification 10
GO:0000244 spliceosomal tri-snRNP complex assembly 20
GO:0000245 spliceosomal complex assembly 24
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0000354 cis assembly of pre-catalytic spliceosome 2
GO:0000387 spliceosomal snRNP assembly 2
GO:0000395 mRNA 5'-splice site recognition 2
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 16
GO:0000469 cleavage involved in rRNA processing 2
GO:0000481 maturation of 5S rRNA 2
GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 2
GO:0000492 box C/D snoRNP assembly 6
GO:0000493 box H/ACA snoRNP assembly 6
GO:0001731 formation of translation preinitiation complex 14
GO:0002103 endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 4
GO:0006364 rRNA processing 10
GO:0006376 mRNA splice site selection 8
GO:0034462 small-subunit processome assembly 2
GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA 4
GO:0042254 ribosome biogenesis 22
GO:0042255 ribosome assembly 2
GO:0042256 mature ribosome assembly 14
GO:0042273 ribosomal large subunit biogenesis 4
GO:0090069 regulation of ribosome biogenesis 4
GO:0090070 positive regulation of ribosome biogenesis 6
GO:2000232 regulation of rRNA processing 10
GO:2000234 positive regulation of rRNA processing 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001