Functional clusters
Information
- Type Gene Ontology
- Description cytochrome complex assembly
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_2 | 3 | CH_aly_353 | 3 | 12 | 0.000974315 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 3 | CH_amhyb_134 | 3 | 8 | 0.000216232 |
| Brassica oleracea | C1 | 3 | CH_bol_123 | 5 | 20 | 0.000000180392 |
| Brassica rapa | Brapa_scaffold_54 | 3 | CH_bra_187 | 4 | 18 | 0.00010714 |
| Ceratophyllum demersum | 1 | 3 | CH_cde_159 | 4 | 34 | 0.000403235 |
| Erigeron canadensis | Conyza_canadensis_unscaffolded:263 | 3 | CH_eca_350 | 3 | 13 | 0.000246581 |
| Erythranthe guttata | scaffold_12 | 3 | CH_egut_224 | 3 | 3 | 0.0000105778 |
| Lonicera japonica | GWHAAZE00000002 | 3 | CH_lonja_99 | 9 | 69 | 0.000000000000102983 |
| Petunia axillaris | Peaxi162Scf00456 | 3 | CH_pax_235 | 3 | 6 | 0.000197207 |
| Salix brachista | GWHAAZH00000020 | 3 | CH_sbr_267 | 3 | 7 | 0.00016985 |
| Simmondsia chinensis | GWHAASQ00000011 | 3 | CH_sci_188 | 3 | 6 | 0.000177192 |
| Sapria himalayana | scaffold22_8815566 | 3 | CH_shi_117 | 3 | 3 | 0.00000868595 |
| Solanum lycopersicum | SL4.0ch00 | 3 | CH_sly_188 | 7 | 80 | 0.000000365032 |
| Schrenkiella parvula | ch3-4 | 3 | CH_spa_25 | 6 | 32 | 0.00000000165373 |
| Zea mays | 2 | 3 | CH_zma_44 | 6 | 27 | 0.000000000172352 |
| Arabidopsis lyrata | scaffold_2 | 4 | CH_aly_353 | 3 | 12 | 0.000974315 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 4 | CH_amhyb_134 | 3 | 8 | 0.000216232 |
| Brassica oleracea | C1 | 4 | CH_bol_123 | 5 | 20 | 0.000000180392 |
| Brassica rapa | Brapa_scaffold_54 | 4 | CH_bra_187 | 4 | 18 | 0.00010714 |
| Ceratophyllum demersum | 1 | 4 | CH_cde_159 | 4 | 34 | 0.000403235 |
| Erigeron canadensis | Conyza_canadensis_unscaffolded:263 | 4 | CH_eca_350 | 3 | 13 | 0.000246581 |
| Erythranthe guttata | scaffold_12 | 4 | CH_egut_224 | 3 | 3 | 0.0000105778 |
| Lonicera japonica | GWHAAZE00000002 | 4 | CH_lonja_99 | 9 | 69 | 0.000000000000102983 |
| Petunia axillaris | Peaxi162Scf00456 | 4 | CH_pax_235 | 3 | 6 | 0.000197207 |
| Salix brachista | GWHAAZH00000020 | 4 | CH_sbr_267 | 3 | 7 | 0.00016985 |
| Simmondsia chinensis | GWHAASQ00000011 | 4 | CH_sci_188 | 3 | 6 | 0.000177192 |
| Sapria himalayana | scaffold22_8815566 | 4 | CH_shi_117 | 3 | 3 | 0.00000868595 |
| Solanum lycopersicum | SL4.0ch00 | 4 | CH_sly_188 | 7 | 80 | 0.000000365032 |
| Schrenkiella parvula | ch3-4 | 4 | CH_spa_25 | 6 | 32 | 0.00000000165373 |
| Zea mays | 2 | 4 | CH_zma_44 | 6 | 27 | 0.000000000172352 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0010190 | cytochrome b6f complex assembly | 2 |
| GO:0033617 | mitochondrial cytochrome c oxidase assembly | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |