Functional clusters
Information
- Type Gene Ontology
- Description plant-type secondary cell wall biogenesis
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr10 | 3 | CH_camsi_285 | 4 | 4 | 0.000000281065 |
| Camellia sinensis var. sinensis | Chr4 | 3 | CH_camsi_80 | 7 | 12 | 0.000000000000766313 |
| Cannabis sativa | NC_044374.1 | 3 | CH_cansat_146 | 4 | 5 | 0.00000236569 |
| Cannabis sativa | NC_044375.1 | 3 | CH_cansat_5 | 14 | 17 | 8.86195e-32 |
| Capsicum annuum | PGAv.1.6.scaffold1169 | 3 | CH_can_178 | 4 | 4 | 0.000000358395 |
| Corylus avellana | 6 | 3 | CH_cav_97 | 5 | 8 | 0.0000000456856 |
| Citrus clementina | scaffold_8 | 3 | CH_ccl_322 | 3 | 3 | 0.00011588 |
| Carpinus fangiana | Cfa04 | 3 | CH_cfa_10 | 10 | 10 | 1.39217e-23 |
| Carpinus fangiana | Cfa04 | 3 | CH_cfa_126 | 4 | 4 | 0.000000412179 |
| Carya illinoinensis | Chr14 | 3 | CH_cil_473 | 3 | 3 | 0.000421562 |
| Carya illinoinensis | Chr13 | 3 | CH_cil_9 | 12 | 12 | 4.46665e-28 |
| Davidia involucrata | GWHABJS00000015 | 3 | CH_din_262 | 3 | 3 | 0.0000984329 |
| Lotus japonicus | chr2 | 3 | CH_lja_79 | 5 | 7 | 0.0000000117854 |
| Magnolia biondii | Chr14 | 3 | CH_mbi_360 | 5 | 30 | 0.0000201586 |
| Manihot esculenta | Chromosome04 | 3 | CH_mes_100 | 7 | 8 | 0.0000000000243675 |
| Manihot esculenta | Chromosome11 | 3 | CH_mes_88 | 7 | 7 | 0.00000000000305944 |
| Nelumbo nucifera | chr3 | 3 | CH_nnu_210 | 3 | 3 | 0.000125259 |
| Olea europaea | chr11 | 3 | CH_oeu_29 | 5 | 5 | 0.000000000232622 |
| Punica granatum | NC_045132.1 | 3 | CH_pgr_154 | 4 | 4 | 0.000000400871 |
| Prunus persica | Pp04 | 3 | CH_ppe_450 | 3 | 4 | 0.000653537 |
| Prunus persica | Pp06 | 3 | CH_ppe_77 | 6 | 6 | 0.000000000000826176 |
| Papaver somniferum | NW_020624376.1 | 3 | CH_pso_146 | 6 | 13 | 0.000000000319825 |
| Papaver somniferum | NC_039359.1 | 3 | CH_pso_241 | 6 | 27 | 0.00000010085 |
| Populus trichocarpa | Chr13 | 3 | CH_ptr_264 | 4 | 5 | 0.0000053133 |
| Populus trichocarpa | Chr19 | 3 | CH_ptr_282 | 4 | 6 | 0.0000159103 |
| Quercus lobata | 1 | 3 | CH_qlo_50 | 10 | 10 | 8.53744e-24 |
| Salvia bowleyana | GWHASIU00000003 | 3 | CH_sbo_289 | 6 | 58 | 0.0000199479 |
| Simmondsia chinensis | GWHAASQ00000017 | 3 | CH_sci_70 | 6 | 28 | 0.000000449755 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_113 | 12 | 35 | 7.39445e-21 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_802 | 4 | 6 | 0.00000475791 |
| Trochodendron aralioides | group18 | 3 | CH_tar_23 | 7 | 7 | 0.00000000000000398037 |
| Vitis vinifera | chr8 | 3 | CH_vvi_115 | 5 | 7 | 0.00000000571214 |
| Vitis vinifera | chr2 | 3 | CH_vvi_286 | 4 | 12 | 0.0000878366 |
| Camellia sinensis var. sinensis | Chr10 | 4 | CH_camsi_285 | 4 | 4 | 0.000000281065 |
| Camellia sinensis var. sinensis | Chr4 | 4 | CH_camsi_80 | 7 | 12 | 0.000000000000766313 |
| Cannabis sativa | NC_044374.1 | 4 | CH_cansat_146 | 4 | 5 | 0.00000236569 |
| Cannabis sativa | NC_044375.1 | 4 | CH_cansat_5 | 14 | 17 | 8.86195e-32 |
| Capsicum annuum | PGAv.1.6.scaffold1169 | 4 | CH_can_178 | 4 | 4 | 0.000000358395 |
| Corylus avellana | 6 | 4 | CH_cav_97 | 5 | 8 | 0.0000000456856 |
| Citrus clementina | scaffold_8 | 4 | CH_ccl_322 | 3 | 3 | 0.00011588 |
| Carpinus fangiana | Cfa04 | 4 | CH_cfa_10 | 10 | 10 | 1.39217e-23 |
| Carpinus fangiana | Cfa04 | 4 | CH_cfa_126 | 4 | 4 | 0.000000412179 |
| Carya illinoinensis | Chr14 | 4 | CH_cil_473 | 3 | 3 | 0.000421562 |
| Carya illinoinensis | Chr13 | 4 | CH_cil_9 | 12 | 12 | 4.46665e-28 |
| Davidia involucrata | GWHABJS00000015 | 4 | CH_din_262 | 3 | 3 | 0.0000984329 |
| Lotus japonicus | chr2 | 4 | CH_lja_79 | 5 | 7 | 0.0000000117854 |
| Magnolia biondii | Chr14 | 4 | CH_mbi_360 | 5 | 30 | 0.0000201586 |
| Manihot esculenta | Chromosome04 | 4 | CH_mes_100 | 7 | 8 | 0.0000000000243675 |
| Manihot esculenta | Chromosome11 | 4 | CH_mes_88 | 7 | 7 | 0.00000000000305944 |
| Nelumbo nucifera | chr3 | 4 | CH_nnu_210 | 3 | 3 | 0.000125259 |
| Olea europaea | chr11 | 4 | CH_oeu_29 | 5 | 5 | 0.000000000232622 |
| Punica granatum | NC_045132.1 | 4 | CH_pgr_154 | 4 | 4 | 0.000000400871 |
| Prunus persica | Pp04 | 4 | CH_ppe_450 | 3 | 4 | 0.000653537 |
| Prunus persica | Pp06 | 4 | CH_ppe_77 | 6 | 6 | 0.000000000000826176 |
| Papaver somniferum | NW_020624376.1 | 4 | CH_pso_146 | 6 | 13 | 0.000000000319825 |
| Papaver somniferum | NC_039359.1 | 4 | CH_pso_241 | 6 | 27 | 0.00000010085 |
| Populus trichocarpa | Chr13 | 4 | CH_ptr_264 | 4 | 5 | 0.0000053133 |
| Populus trichocarpa | Chr19 | 4 | CH_ptr_282 | 4 | 6 | 0.0000159103 |
| Quercus lobata | 1 | 4 | CH_qlo_50 | 10 | 10 | 8.53744e-24 |
| Salvia bowleyana | GWHASIU00000003 | 4 | CH_sbo_289 | 6 | 58 | 0.0000199479 |
| Simmondsia chinensis | GWHAASQ00000017 | 4 | CH_sci_70 | 6 | 28 | 0.000000449755 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_113 | 12 | 35 | 7.39445e-21 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_802 | 4 | 6 | 0.00000475791 |
| Trochodendron aralioides | group18 | 4 | CH_tar_23 | 7 | 7 | 0.00000000000000398037 |
| Vitis vinifera | chr8 | 4 | CH_vvi_115 | 5 | 7 | 0.00000000571214 |
| Vitis vinifera | chr2 | 4 | CH_vvi_286 | 4 | 12 | 0.0000878366 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:1901347 | negative regulation of secondary cell wall biogenesis | 8 |
| GO:2000652 | regulation of secondary cell wall biogenesis | 8 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |