Functional clusters
Information
- Type Gene Ontology
- Description plant-type cell wall organization
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 3 | CH_aag_29 | 7 | 18 | 0.00000000096224 |
| Arabidopsis lyrata | scaffold_7 | 3 | CH_aly_170 | 4 | 4 | 0.0000170134 |
| Camellia sinensis var. sinensis | Chr7 | 3 | CH_camsi_38 | 9 | 9 | 1.67248e-17 |
| Cardamine hirsuta | Chr8 | 3 | CH_chi_188 | 4 | 4 | 0.0000229172 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2048 | 3 | CH_cqu_162 | 5 | 5 | 0.000000202768 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1412 | 3 | CH_cqu_163 | 5 | 5 | 0.000000202768 |
| Capsella rubella | scaffold_7 | 3 | CH_cru_239 | 4 | 5 | 0.000112048 |
| Eutrema salsugineum | scaffold_14 | 3 | CH_esa_39 | 7 | 10 | 0.000000000380086 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_197 | 4 | 4 | 0.00000887138 |
| Helianthus annuus | HanXRQChr12 | 3 | CH_han_150 | 6 | 6 | 0.000000000214932 |
| Lupinus albus | Lalb_Chr04 | 3 | CH_lal_74 | 6 | 6 | 0.00000000108258 |
| Lotus japonicus | chr1 | 3 | CH_lja_149 | 6 | 14 | 0.00000221148 |
| Malus domestica | Chr12 | 3 | CH_mdo_425 | 5 | 12 | 0.0000492059 |
| Marchantia polymorpha | scaffold_50 | 3 | CH_mpo_66 | 5 | 8 | 0.0000229241 |
| Medicago truncatula | chr7 | 3 | CH_mtr_742 | 4 | 9 | 0.00075164 |
| Oryza sativa ssp. japonica | chr02 | 3 | CH_osa_148 | 6 | 13 | 0.000000152009 |
| Oryza sativa ssp. japonica | chr03 | 3 | CH_osa_156 | 6 | 15 | 0.000000281336 |
| Physcomitrium patens | Chr14 | 3 | CH_ppa_63 | 6 | 14 | 0.00000520249 |
| Papaver somniferum | NC_039361.1 | 3 | CH_pso_595 | 5 | 19 | 0.000339179 |
| Rhododendron simsii | chr07 | 3 | CH_rsi_137 | 6 | 6 | 0.000000000457416 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_141 | 12 | 19 | 1.95849e-18 |
| Solanum lycopersicum | SL4.0ch03 | 3 | CH_sly_76 | 12 | 63 | 0.00000000000753396 |
| Solanum pennellii | Spenn-ch03 | 3 | CH_spe_109 | 9 | 55 | 0.00000000737968 |
| Solanum tuberosum | ST4.03ch03 | 3 | CH_stu_409 | 7 | 56 | 0.0000756204 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 3 | CH_tpr_313 | 4 | 7 | 0.000422619 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_115 | 5 | 5 | 0.000000208958 |
| Zea mays | 1 | 3 | CH_zma_120 | 5 | 6 | 0.000000719729 |
| Zea mays | 6 | 3 | CH_zma_61 | 7 | 13 | 0.0000000022386 |
| Anthoceros agrestis | Sc2ySwM_344 | 4 | CH_aag_29 | 7 | 18 | 0.00000000096224 |
| Arabidopsis lyrata | scaffold_7 | 4 | CH_aly_170 | 4 | 4 | 0.0000170134 |
| Camellia sinensis var. sinensis | Chr7 | 4 | CH_camsi_38 | 9 | 9 | 1.67248e-17 |
| Cardamine hirsuta | Chr8 | 4 | CH_chi_188 | 4 | 4 | 0.0000229172 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2048 | 4 | CH_cqu_162 | 5 | 5 | 0.000000202768 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1412 | 4 | CH_cqu_163 | 5 | 5 | 0.000000202768 |
| Capsella rubella | scaffold_7 | 4 | CH_cru_239 | 4 | 5 | 0.000112048 |
| Eutrema salsugineum | scaffold_14 | 4 | CH_esa_39 | 7 | 10 | 0.000000000380086 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_197 | 4 | 4 | 0.00000887138 |
| Helianthus annuus | HanXRQChr12 | 4 | CH_han_150 | 6 | 6 | 0.000000000214932 |
| Lupinus albus | Lalb_Chr04 | 4 | CH_lal_74 | 6 | 6 | 0.00000000108258 |
| Lotus japonicus | chr1 | 4 | CH_lja_149 | 6 | 14 | 0.00000221148 |
| Malus domestica | Chr12 | 4 | CH_mdo_425 | 5 | 12 | 0.0000492059 |
| Marchantia polymorpha | scaffold_50 | 4 | CH_mpo_66 | 5 | 8 | 0.0000229241 |
| Medicago truncatula | chr7 | 4 | CH_mtr_742 | 4 | 9 | 0.00075164 |
| Oryza sativa ssp. japonica | chr02 | 4 | CH_osa_148 | 6 | 13 | 0.000000152009 |
| Oryza sativa ssp. japonica | chr03 | 4 | CH_osa_156 | 6 | 15 | 0.000000281336 |
| Physcomitrium patens | Chr14 | 4 | CH_ppa_63 | 6 | 14 | 0.00000520249 |
| Papaver somniferum | NC_039361.1 | 4 | CH_pso_595 | 5 | 19 | 0.000339179 |
| Rhododendron simsii | chr07 | 4 | CH_rsi_137 | 6 | 6 | 0.000000000457416 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_141 | 12 | 19 | 1.95849e-18 |
| Solanum lycopersicum | SL4.0ch03 | 4 | CH_sly_76 | 12 | 63 | 0.00000000000753396 |
| Solanum pennellii | Spenn-ch03 | 4 | CH_spe_109 | 9 | 55 | 0.00000000737968 |
| Solanum tuberosum | ST4.03ch03 | 4 | CH_stu_409 | 7 | 56 | 0.0000756204 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 4 | CH_tpr_313 | 4 | 7 | 0.000422619 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_115 | 5 | 5 | 0.000000208958 |
| Zea mays | 1 | 4 | CH_zma_120 | 5 | 6 | 0.000000719729 |
| Zea mays | 6 | 4 | CH_zma_61 | 7 | 13 | 0.0000000022386 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009827 | plant-type cell wall modification | 4 |
| GO:0009828 | plant-type cell wall loosening | 6 |
| GO:0009829 | cell wall modification involved in fruit ripening | 2 |
| GO:0009830 | cell wall modification involved in abscission | 10 |
| GO:0009831 | plant-type cell wall modification involved in multidimensional cell growth | 4 |
| GO:0010215 | cellulose microfibril organization | 72 |
| GO:0010306 | rhamnogalacturonan II biosynthetic process | 6 |
| GO:0010400 | rhamnogalacturonan I side chain metabolic process | 2 |
| GO:0010401 | pectic galactan metabolic process | 4 |
| GO:0052324 | plant-type cell wall cellulose biosynthetic process | 12 |
| GO:0071668 | plant-type cell wall assembly | 2 |
| GO:1902066 | regulation of cell wall pectin metabolic process | 4 |
| GO:2001011 | positive regulation of plant-type cell wall cellulose biosynthetic process | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |