Functional clusters

Information

  • Type Gene Ontology
  • Description external encapsulating structure organization

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Lotus japonicus chr2 3 CH_lja_370 7 60 0.000899398
Utricularia gibba unitig_32 3 CH_ugi_136 4 7 0.000713334
Vanilla planifolia CM028156.1 3 CH_vpl_371 6 34 0.000871727
Lotus japonicus chr2 4 CH_lja_370 7 60 0.000899398
Utricularia gibba unitig_32 4 CH_ugi_136 4 7 0.000713334
Vanilla planifolia CM028156.1 4 CH_vpl_371 6 34 0.000871727

Available child term results

Ontology identifier Description Number of clusters
GO:0009664 plant-type cell wall organization 56
GO:0009827 plant-type cell wall modification 4
GO:0009828 plant-type cell wall loosening 6
GO:0009829 cell wall modification involved in fruit ripening 2
GO:0009830 cell wall modification involved in abscission 10
GO:0009831 plant-type cell wall modification involved in multidimensional cell growth 4
GO:0010215 cellulose microfibril organization 72
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010400 rhamnogalacturonan I side chain metabolic process 2
GO:0010401 pectic galactan metabolic process 4
GO:0010584 pollen exine formation 8
GO:0042545 cell wall modification 14
GO:0042547 cell wall modification involved in multidimensional cell growth 42
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0052386 cell wall thickening 2
GO:0052543 callose deposition in cell wall 4
GO:0071555 cell wall organization 28
GO:0071668 plant-type cell wall assembly 2
GO:0080110 sporopollenin biosynthetic process 4
GO:1902066 regulation of cell wall pectin metabolic process 4
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001