Functional clusters

Information

  • Type Gene Ontology
  • Description cell wall organization

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 3 CH_arhy_160 11 28 0.000000000020719
Capsicum annuum PGAv.1.6.scaffold569 3 CH_can_102 7 8 0.000000000865121
Coffea canephora chr2 3 CH_ccan_319 4 24 0.000297459
Nicotiana tabacum Nitab4.5_0002347 3 CH_nta_52 5 6 0.00000452673
Sequoiadendron giganteum chr3 3 CH_sgi_1359 5 10 0.000861545
Solanum lycopersicum SL4.0ch02 3 CH_sly_469 5 8 0.000265616
Solanum lycopersicum SL4.0ch07 3 CH_sly_517 4 4 0.000456056
Solanum pennellii Spenn-ch02 3 CH_spe_154 5 5 0.000000258639
Solanum pennellii Spenn-ch07 3 CH_spe_288 4 4 0.0000461466
Trochodendron aralioides group6 3 CH_tar_110 6 6 0.0000000379954
Trifolium pratense Tp57577_TGAC_v2_LG7 3 CH_tpr_262 4 4 0.000223922
Tripterygium wilfordii NC_052246.1 3 CH_twi_228 10 74 0.000120257
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_324 4 4 0.000388702
Vigna mungo CM024074.1 3 CH_vmu_206 4 4 0.00016257
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 4 CH_arhy_160 11 28 0.000000000020719
Capsicum annuum PGAv.1.6.scaffold569 4 CH_can_102 7 8 0.000000000865121
Coffea canephora chr2 4 CH_ccan_319 4 24 0.000297459
Nicotiana tabacum Nitab4.5_0002347 4 CH_nta_52 5 6 0.00000452673
Sequoiadendron giganteum chr3 4 CH_sgi_1359 5 10 0.000861545
Solanum lycopersicum SL4.0ch02 4 CH_sly_469 5 8 0.000265616
Solanum lycopersicum SL4.0ch07 4 CH_sly_517 4 4 0.000456056
Solanum pennellii Spenn-ch02 4 CH_spe_154 5 5 0.000000258639
Solanum pennellii Spenn-ch07 4 CH_spe_288 4 4 0.0000461466
Trochodendron aralioides group6 4 CH_tar_110 6 6 0.0000000379954
Trifolium pratense Tp57577_TGAC_v2_LG7 4 CH_tpr_262 4 4 0.000223922
Tripterygium wilfordii NC_052246.1 4 CH_twi_228 10 74 0.000120257
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_324 4 4 0.000388702
Vigna mungo CM024074.1 4 CH_vmu_206 4 4 0.00016257

Available child term results

Ontology identifier Description Number of clusters
GO:0009664 plant-type cell wall organization 56
GO:0009827 plant-type cell wall modification 4
GO:0009828 plant-type cell wall loosening 6
GO:0009829 cell wall modification involved in fruit ripening 2
GO:0009830 cell wall modification involved in abscission 10
GO:0009831 plant-type cell wall modification involved in multidimensional cell growth 4
GO:0010215 cellulose microfibril organization 72
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010400 rhamnogalacturonan I side chain metabolic process 2
GO:0010401 pectic galactan metabolic process 4
GO:0042545 cell wall modification 14
GO:0042547 cell wall modification involved in multidimensional cell growth 42
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0052386 cell wall thickening 2
GO:0052543 callose deposition in cell wall 4
GO:0071668 plant-type cell wall assembly 2
GO:1902066 regulation of cell wall pectin metabolic process 4
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001