Functional clusters
Information
- Type Gene Ontology
- Description endoplasmic reticulum membrane organization
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Cicer arietinum L. | Ca_LG7_v3 | 3 | CH_car_158 | 2 | 2 | 0.00023349 |
| Corylus avellana | 1 | 3 | CH_cav_403 | 2 | 3 | 0.000689981 |
| Carpinus fangiana | Cfa06 | 3 | CH_cfa_8 | 8 | 11 | 7.43279e-25 |
| Carya illinoinensis | Chr02 | 3 | CH_cil_61 | 5 | 5 | 6.64322e-16 |
| Cucumis melo | chr06 | 3 | CH_cme_68 | 3 | 3 | 0.00000000667579 |
| Cucumis sativus L. | chr3 | 3 | CH_csa_192 | 2 | 2 | 0.0000834759 |
| Eucalyptus grandis | Chr02 | 3 | CH_egr_410 | 3 | 3 | 0.0000000205534 |
| Glycine max | Gm07 | 3 | CH_gma_394 | 2 | 2 | 0.000227734 |
| Lotus japonicus | chr6 | 3 | CH_lja_265 | 2 | 3 | 0.000214516 |
| Medicago truncatula | chr4 | 3 | CH_mtr_575 | 2 | 2 | 0.000123259 |
| Punica granatum | NC_045127.1 | 3 | CH_pgr_70 | 4 | 4 | 0.0000000000316872 |
| Prunus persica | Pp01 | 3 | CH_ppe_80 | 4 | 4 | 0.00000000000124543 |
| Phaseolus vulgaris | Chr03 | 3 | CH_pvu_295 | 2 | 2 | 0.000220418 |
| Quercus lobata | 6 | 3 | CH_qlo_59 | 7 | 9 | 5.37101e-23 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_310 | 3 | 11 | 0.000000393282 |
| Rhododendron simsii | chr02 | 3 | CH_rsi_64 | 5 | 6 | 7.80455e-16 |
| Simmondsia chinensis | GWHAASQ00000015 | 3 | CH_sci_219 | 2 | 2 | 0.000255428 |
| Sechium edule | LG12 | 3 | CH_sed_71 | 3 | 4 | 0.000000030538 |
| Selaginella moellendorffii | scaffold_7 | 3 | CH_smo_118 | 2 | 2 | 0.0000933707 |
| Trochodendron aralioides | group1 | 3 | CH_tar_402 | 2 | 2 | 0.00036022 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_244 | 2 | 2 | 0.0000929238 |
| Vigna mungo | CM024074.1 | 3 | CH_vmu_279 | 2 | 2 | 0.000387685 |
| Cicer arietinum L. | Ca_LG7_v3 | 4 | CH_car_158 | 2 | 2 | 0.00023349 |
| Corylus avellana | 1 | 4 | CH_cav_403 | 2 | 3 | 0.000689981 |
| Carpinus fangiana | Cfa06 | 4 | CH_cfa_8 | 8 | 11 | 7.43279e-25 |
| Carya illinoinensis | Chr02 | 4 | CH_cil_61 | 5 | 5 | 6.64322e-16 |
| Cucumis melo | chr06 | 4 | CH_cme_68 | 3 | 3 | 0.00000000667579 |
| Cucumis sativus L. | chr3 | 4 | CH_csa_192 | 2 | 2 | 0.0000834759 |
| Eucalyptus grandis | Chr02 | 4 | CH_egr_410 | 3 | 3 | 0.0000000205534 |
| Glycine max | Gm07 | 4 | CH_gma_394 | 2 | 2 | 0.000227734 |
| Lotus japonicus | chr6 | 4 | CH_lja_265 | 2 | 3 | 0.000214516 |
| Medicago truncatula | chr4 | 4 | CH_mtr_575 | 2 | 2 | 0.000123259 |
| Punica granatum | NC_045127.1 | 4 | CH_pgr_70 | 4 | 4 | 0.0000000000316872 |
| Prunus persica | Pp01 | 4 | CH_ppe_80 | 4 | 4 | 0.00000000000124543 |
| Phaseolus vulgaris | Chr03 | 4 | CH_pvu_295 | 2 | 2 | 0.000220418 |
| Quercus lobata | 6 | 4 | CH_qlo_59 | 7 | 9 | 5.37101e-23 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_310 | 3 | 11 | 0.000000393282 |
| Rhododendron simsii | chr02 | 4 | CH_rsi_64 | 5 | 6 | 7.80455e-16 |
| Simmondsia chinensis | GWHAASQ00000015 | 4 | CH_sci_219 | 2 | 2 | 0.000255428 |
| Sechium edule | LG12 | 4 | CH_sed_71 | 3 | 4 | 0.000000030538 |
| Selaginella moellendorffii | scaffold_7 | 4 | CH_smo_118 | 2 | 2 | 0.0000933707 |
| Trochodendron aralioides | group1 | 4 | CH_tar_402 | 2 | 2 | 0.00036022 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_244 | 2 | 2 | 0.0000929238 |
| Vigna mungo | CM024074.1 | 4 | CH_vmu_279 | 2 | 2 | 0.000387685 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |