Functional clusters
Information
- Type Gene Ontology
- Description ribulose bisphosphate carboxylase complex assembly
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_7 | 3 | CH_aly_119 | 3 | 3 | 0.00000107829 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 3 | CH_amhyb_93 | 3 | 5 | 0.000038658 |
| Arabidopsis thaliana | Chr5 | 3 | CH_ath_270 | 3 | 7 | 0.00000710722 |
| Brassica carinata | ChrC03 | 3 | CH_bca_507 | 3 | 5 | 0.0000409952 |
| Brassica napus | A02 | 3 | CH_bna_419 | 3 | 5 | 0.0000472065 |
| Brassica napus | C02 | 3 | CH_bna_454 | 3 | 6 | 0.0000943884 |
| Brassica napus | C04 | 3 | CH_bna_484 | 3 | 7 | 0.000165137 |
| Brassica napus | A04 | 3 | CH_bna_523 | 3 | 8 | 0.00026415 |
| Brassica oleracea | C2 | 3 | CH_bol_204 | 3 | 4 | 0.00000730623 |
| Brassica oleracea | C4 | 3 | CH_bol_289 | 3 | 8 | 0.000102195 |
| Brassica rapa | A04 | 3 | CH_bra_216 | 3 | 9 | 0.000189206 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 3 | CH_bvu_135 | 3 | 4 | 0.00000904537 |
| Capsicum annuum | PGAv.1.6.scaffold625 | 3 | CH_can_112 | 4 | 5 | 0.00000000279027 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1710 | 3 | CH_cqu_291 | 3 | 4 | 0.0000179099 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1352 | 3 | CH_cqu_292 | 3 | 4 | 0.0000179099 |
| Helianthus annuus | HanXRQChr11 | 3 | CH_han_172 | 4 | 4 | 0.00000000126639 |
| Lotus japonicus | chr1 | 3 | CH_lja_140 | 3 | 3 | 0.0000012656 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 3 | CH_lsa_62 | 5 | 5 | 0.000000000000448624 |
| Marchantia polymorpha | scaffold_114 | 3 | CH_mpo_3 | 9 | 9 | 9.23683e-24 |
| Marchantia polymorpha | scaffold_146 | 3 | CH_mpo_67 | 3 | 3 | 0.0000243354 |
| Medicago truncatula | chr7 | 3 | CH_mtr_115 | 5 | 8 | 0.00000000000239513 |
| Nelumbo nucifera | chr4 | 3 | CH_nnu_111 | 3 | 4 | 0.000000765683 |
| Physcomitrium patens | Chr13 | 3 | CH_ppa_18 | 5 | 11 | 0.0000000183248 |
| Pisum sativum | chr3LG5 | 3 | CH_psa_36 | 5 | 8 | 0.00000000000246193 |
| Papaver somniferum | NW_020620714.1 | 3 | CH_pso_360 | 3 | 4 | 0.0000070032 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_396 | 3 | 5 | 0.0000175045 |
| Phaseolus vulgaris | Chr04 | 3 | CH_pvu_171 | 3 | 4 | 0.00000388598 |
| Salvia bowleyana | GWHASIU00000003 | 3 | CH_sbo_204 | 3 | 3 | 0.00000037262 |
| Arabidopsis lyrata | scaffold_7 | 4 | CH_aly_119 | 3 | 3 | 0.00000107829 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 4 | CH_amhyb_93 | 3 | 5 | 0.000038658 |
| Arabidopsis thaliana | Chr5 | 4 | CH_ath_270 | 3 | 7 | 0.00000710722 |
| Brassica carinata | ChrC03 | 4 | CH_bca_507 | 3 | 5 | 0.0000409952 |
| Brassica napus | A02 | 4 | CH_bna_419 | 3 | 5 | 0.0000472065 |
| Brassica napus | C02 | 4 | CH_bna_454 | 3 | 6 | 0.0000943884 |
| Brassica napus | C04 | 4 | CH_bna_484 | 3 | 7 | 0.000165137 |
| Brassica napus | A04 | 4 | CH_bna_523 | 3 | 8 | 0.00026415 |
| Brassica oleracea | C2 | 4 | CH_bol_204 | 3 | 4 | 0.00000730623 |
| Brassica oleracea | C4 | 4 | CH_bol_289 | 3 | 8 | 0.000102195 |
| Brassica rapa | A04 | 4 | CH_bra_216 | 3 | 9 | 0.000189206 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 4 | CH_bvu_135 | 3 | 4 | 0.00000904537 |
| Capsicum annuum | PGAv.1.6.scaffold625 | 4 | CH_can_112 | 4 | 5 | 0.00000000279027 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1710 | 4 | CH_cqu_291 | 3 | 4 | 0.0000179099 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1352 | 4 | CH_cqu_292 | 3 | 4 | 0.0000179099 |
| Helianthus annuus | HanXRQChr11 | 4 | CH_han_172 | 4 | 4 | 0.00000000126639 |
| Lotus japonicus | chr1 | 4 | CH_lja_140 | 3 | 3 | 0.0000012656 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 4 | CH_lsa_62 | 5 | 5 | 0.000000000000448624 |
| Marchantia polymorpha | scaffold_114 | 4 | CH_mpo_3 | 9 | 9 | 9.23683e-24 |
| Marchantia polymorpha | scaffold_146 | 4 | CH_mpo_67 | 3 | 3 | 0.0000243354 |
| Medicago truncatula | chr7 | 4 | CH_mtr_115 | 5 | 8 | 0.00000000000239513 |
| Nelumbo nucifera | chr4 | 4 | CH_nnu_111 | 3 | 4 | 0.000000765683 |
| Physcomitrium patens | Chr13 | 4 | CH_ppa_18 | 5 | 11 | 0.0000000183248 |
| Pisum sativum | chr3LG5 | 4 | CH_psa_36 | 5 | 8 | 0.00000000000246193 |
| Papaver somniferum | NW_020620714.1 | 4 | CH_pso_360 | 3 | 4 | 0.0000070032 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_396 | 3 | 5 | 0.0000175045 |
| Phaseolus vulgaris | Chr04 | 4 | CH_pvu_171 | 3 | 4 | 0.00000388598 |
| Salvia bowleyana | GWHASIU00000003 | 4 | CH_sbo_204 | 3 | 3 | 0.00000037262 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |