Functional clusters
Information
- Type Gene Ontology
- Description nucleosome assembly
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 3 | CH_arhy_358 | 4 | 7 | 0.0000022893 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_395 | 3 | 4 | 0.0000698493 |
| Brassica carinata | ChrC05 | 3 | CH_bca_418 | 4 | 9 | 0.00000939969 |
| Brassica napus | C06 | 3 | CH_bna_334 | 4 | 9 | 0.0000102353 |
| Camellia sinensis var. sinensis | Chr15 | 3 | CH_camsi_392 | 5 | 33 | 0.0000050797 |
| Daucus carota | DCARv2_Chr6 | 3 | CH_dca_3 | 16 | 16 | 4.87805e-40 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 3 | CH_eca_451 | 3 | 9 | 0.000740202 |
| Erythranthe guttata | scaffold_12 | 3 | CH_egut_418 | 4 | 29 | 0.000848001 |
| Fragaria x ananassa | Fvb6-2 | 3 | CH_fan_419 | 3 | 3 | 0.000188045 |
| Fragaria vesca | Fvb2 | 3 | CH_fve_380 | 3 | 5 | 0.000842425 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_77 | 5 | 6 | 0.00000000083061 |
| Helianthus annuus | HanXRQChr15 | 3 | CH_han_653 | 3 | 6 | 0.000408754 |
| Magnolia biondii | Chr16 | 3 | CH_mbi_455 | 3 | 5 | 0.000129153 |
| Medicago truncatula | chr2 | 3 | CH_mtr_669 | 3 | 5 | 0.00041002 |
| Oryza sativa ssp. japonica | chr01 | 3 | CH_osa_98 | 7 | 47 | 0.00000000334721 |
| Physcomitrium patens | Chr17 | 3 | CH_ppa_187 | 3 | 4 | 0.000389207 |
| Pisum sativum | chr6LG2 | 3 | CH_psa_15 | 8 | 12 | 7.36508e-17 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_339 | 4 | 7 | 0.000000901332 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_606 | 3 | 4 | 0.00012621 |
| Solanum lycopersicum | SL4.0ch11 | 3 | CH_sly_198 | 5 | 12 | 0.000000532074 |
| Solanum pennellii | Spenn-ch10 | 3 | CH_spe_188 | 4 | 7 | 0.00000164425 |
| Solanum pennellii | Spenn-ch06 | 3 | CH_spe_290 | 3 | 3 | 0.0000481203 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_400 | 3 | CH_tpr_80 | 4 | 4 | 0.0000000681416 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 4 | CH_arhy_358 | 4 | 7 | 0.0000022893 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_395 | 3 | 4 | 0.0000698493 |
| Brassica carinata | ChrC05 | 4 | CH_bca_418 | 4 | 9 | 0.00000939969 |
| Brassica napus | C06 | 4 | CH_bna_334 | 4 | 9 | 0.0000102353 |
| Camellia sinensis var. sinensis | Chr15 | 4 | CH_camsi_392 | 5 | 33 | 0.0000050797 |
| Daucus carota | DCARv2_Chr6 | 4 | CH_dca_3 | 16 | 16 | 4.87805e-40 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 4 | CH_eca_451 | 3 | 9 | 0.000740202 |
| Erythranthe guttata | scaffold_12 | 4 | CH_egut_418 | 4 | 29 | 0.000848001 |
| Fragaria x ananassa | Fvb6-2 | 4 | CH_fan_419 | 3 | 3 | 0.000188045 |
| Fragaria vesca | Fvb2 | 4 | CH_fve_380 | 3 | 5 | 0.000842425 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_77 | 5 | 6 | 0.00000000083061 |
| Helianthus annuus | HanXRQChr15 | 4 | CH_han_653 | 3 | 6 | 0.000408754 |
| Magnolia biondii | Chr16 | 4 | CH_mbi_455 | 3 | 5 | 0.000129153 |
| Medicago truncatula | chr2 | 4 | CH_mtr_669 | 3 | 5 | 0.00041002 |
| Oryza sativa ssp. japonica | chr01 | 4 | CH_osa_98 | 7 | 47 | 0.00000000334721 |
| Physcomitrium patens | Chr17 | 4 | CH_ppa_187 | 3 | 4 | 0.000389207 |
| Pisum sativum | chr6LG2 | 4 | CH_psa_15 | 8 | 12 | 7.36508e-17 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_339 | 4 | 7 | 0.000000901332 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_606 | 3 | 4 | 0.00012621 |
| Solanum lycopersicum | SL4.0ch11 | 4 | CH_sly_198 | 5 | 12 | 0.000000532074 |
| Solanum pennellii | Spenn-ch10 | 4 | CH_spe_188 | 4 | 7 | 0.00000164425 |
| Solanum pennellii | Spenn-ch06 | 4 | CH_spe_290 | 3 | 3 | 0.0000481203 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_400 | 4 | CH_tpr_80 | 4 | 4 | 0.0000000681416 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0006335 | DNA replication-dependent nucleosome assembly | 12 |
| GO:0006336 | DNA replication-independent nucleosome assembly | 16 |
| GO:0034080 | CENP-A containing nucleosome assembly | 4 |
| GO:1903099 | positive regulation of CENP-A containing nucleosome assembly | 6 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |