Functional clusters

Information

  • Type Gene Ontology
  • Description cellular component biogenesis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr12 3 CH_camsi_545 9 22 0.0000725982
Camellia sinensis var. sinensis Chr12 4 CH_camsi_545 9 22 0.0000725982

Available child term results

Ontology identifier Description Number of clusters
GO:0000027 ribosomal large subunit assembly 6
GO:0000028 ribosomal small subunit assembly 12
GO:0000032 cell wall mannoprotein biosynthetic process 2
GO:0000055 ribosomal large subunit export from nucleus 38
GO:0000056 ribosomal small subunit export from nucleus 22
GO:0000154 rRNA modification 10
GO:0000183 rDNA heterochromatin assembly 16
GO:0000244 spliceosomal tri-snRNP complex assembly 20
GO:0000245 spliceosomal complex assembly 24
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0000354 cis assembly of pre-catalytic spliceosome 2
GO:0000387 spliceosomal snRNP assembly 2
GO:0000395 mRNA 5'-splice site recognition 2
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 16
GO:0000469 cleavage involved in rRNA processing 2
GO:0000481 maturation of 5S rRNA 2
GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 2
GO:0000492 box C/D snoRNP assembly 6
GO:0000493 box H/ACA snoRNP assembly 6
GO:0000913 preprophase band assembly 2
GO:0000914 phragmoplast assembly 20
GO:0001188 RNA polymerase I preinitiation complex assembly 8
GO:0001731 formation of translation preinitiation complex 14
GO:0002103 endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 4
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006334 nucleosome assembly 46
GO:0006335 DNA replication-dependent nucleosome assembly 12
GO:0006336 DNA replication-independent nucleosome assembly 16
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006364 rRNA processing 10
GO:0006376 mRNA splice site selection 8
GO:0007021 tubulin complex assembly 12
GO:0007043 cell-cell junction assembly 38
GO:0007130 synaptonemal complex assembly 4
GO:0009832 plant-type cell wall biogenesis 22
GO:0009833 plant-type primary cell wall biogenesis 4
GO:0009834 plant-type secondary cell wall biogenesis 66
GO:0009969 xyloglucan biosynthetic process 4
GO:0010190 cytochrome b6f complex assembly 2
GO:0010215 cellulose microfibril organization 72
GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly 2
GO:0010265 SCF complex assembly 12
GO:0010270 photosystem II oxygen evolving complex assembly 8
GO:0010275 NAD(P)H dehydrogenase complex assembly 2
GO:0010306 rhamnogalacturonan II biosynthetic process 6
GO:0010387 COP9 signalosome assembly 14
GO:0010417 glucuronoxylan biosynthetic process 2
GO:0010584 pollen exine formation 8
GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly 16
GO:0010964 regulation of heterochromatin assembly by small RNA 4
GO:0010968 regulation of microtubule nucleation 20
GO:0016226 iron-sulfur cluster assembly 20
GO:0016584 nucleosome positioning 2
GO:0017004 cytochrome complex assembly 30
GO:0017126 nucleologenesis 4
GO:0018283 iron incorporation into metallo-sulfur cluster 6
GO:0022607 cellular component assembly 2
GO:0022613 ribonucleoprotein complex biogenesis 4
GO:0030833 regulation of actin filament polymerization 10
GO:0031116 positive regulation of microtubule polymerization 4
GO:0031508 pericentric heterochromatin assembly 18
GO:0032955 regulation of division septum assembly 24
GO:0032981 mitochondrial respiratory chain complex I assembly 6
GO:0033614 chloroplast proton-transporting ATP synthase complex assembly 6
GO:0033617 mitochondrial cytochrome c oxidase assembly 4
GO:0034063 stress granule assembly 4
GO:0034080 CENP-A containing nucleosome assembly 4
GO:0034214 protein hexamerization 4
GO:0034314 Arp2/3 complex-mediated actin nucleation 12
GO:0034462 small-subunit processome assembly 2
GO:0034508 centromere complex assembly 2
GO:0034553 mitochondrial respiratory chain complex II assembly 2
GO:0034622 cellular protein-containing complex assembly 6
GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA 4
GO:0036258 multivesicular body assembly 4
GO:0042254 ribosome biogenesis 22
GO:0042255 ribosome assembly 2
GO:0042256 mature ribosome assembly 14
GO:0042273 ribosomal large subunit biogenesis 4
GO:0043248 proteasome assembly 16
GO:0043254 regulation of protein-containing complex assembly 2
GO:0043461 proton-transporting ATP synthase complex assembly 6
GO:0044571 [2Fe-2S] cluster assembly 4
GO:0045010 actin nucleation 2
GO:0045492 xylan biosynthetic process 18
GO:0048041 focal adhesion assembly 4
GO:0048208 COPII vesicle coating 56
GO:0048564 photosystem I assembly 6
GO:0051017 actin filament bundle assembly 14
GO:0051123 RNA polymerase II preinitiation complex assembly 12
GO:0051127 positive regulation of actin nucleation 2
GO:0051131 chaperone-mediated protein complex assembly 12
GO:0051259 protein complex oligomerization 30
GO:0051260 protein homooligomerization 12
GO:0051290 protein heterotetramerization 16
GO:0051382 kinetochore assembly 4
GO:0052324 plant-type cell wall cellulose biosynthetic process 12
GO:0060271 cilium assembly 8
GO:0065003 protein-containing complex assembly 2
GO:0070071 proton-transporting two-sector ATPase complex assembly 2
GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly 2
GO:0070592 cell wall polysaccharide biosynthetic process 4
GO:0070682 proteasome regulatory particle assembly 6
GO:0070897 transcription preinitiation complex assembly 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0071562 nucleus-vacuole junction assembly 2
GO:0071668 plant-type cell wall assembly 2
GO:0071784 endoplasmic reticulum cisternal network assembly 10
GO:0080110 sporopollenin biosynthetic process 4
GO:0090063 positive regulation of microtubule nucleation 4
GO:0090069 regulation of ribosome biogenesis 4
GO:0090070 positive regulation of ribosome biogenesis 6
GO:0090153 regulation of sphingolipid biosynthetic process 2
GO:0090173 regulation of synaptonemal complex assembly 6
GO:0090306 meiotic spindle assembly 8
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:0097250 mitochondrial respirasome assembly 6
GO:0110102 ribulose bisphosphate carboxylase complex assembly 56
GO:0140042 lipid droplet formation 2
GO:1901347 negative regulation of secondary cell wall biogenesis 8
GO:1901673 regulation of mitotic spindle assembly 12
GO:1903099 positive regulation of CENP-A containing nucleosome assembly 6
GO:1905499 trichome papilla formation 8
GO:1905515 non-motile cilium assembly 2
GO:2000232 regulation of rRNA processing 10
GO:2000234 positive regulation of rRNA processing 8
GO:2000652 regulation of secondary cell wall biogenesis 8
GO:2000786 positive regulation of autophagosome assembly 2
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001