Functional clusters
Information
- Type Gene Ontology
- Description endoplasmic reticulum organization
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 3 | CH_acertr_51 | 5 | 6 | 0.0000000000292598 |
| Avicennia marina | ScioBoG_3895_HRSCAF_3912 | 3 | CH_ama_19 | 4 | 5 | 0.00000012155 |
| Avicennia marina | ScioBoG_102836_HRSCAF_103072 | 3 | CH_ama_47 | 3 | 3 | 0.0000256491 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 3 | CH_bvu_78 | 4 | 5 | 0.0000000412242 |
| Camellia sinensis var. sinensis | Chr1 | 3 | CH_camsi_469 | 3 | 4 | 0.0000290057 |
| Chara braunii | BFEA01000246 | 3 | CH_cbr_51 | 3 | 4 | 0.000000620768 |
| Coffea canephora | chr2 | 3 | CH_ccan_399 | 3 | 47 | 0.000891527 |
| Citrullus lanatus | CG_Chr01 | 3 | CH_cla_79 | 3 | 3 | 0.00000802747 |
| Cucumis melo | chr08 | 3 | CH_cme_129 | 3 | 3 | 0.00000453954 |
| Cucumis sativus L. | chr6 | 3 | CH_csa_139 | 3 | 3 | 0.00000585356 |
| Eucalyptus grandis | Chr08 | 3 | CH_egr_92 | 8 | 11 | 9.23817e-21 |
| Helianthus annuus | HanXRQChr11 | 3 | CH_han_243 | 4 | 5 | 0.0000000711577 |
| Lotus japonicus | chr2 | 3 | CH_lja_103 | 4 | 6 | 0.000000145547 |
| Lonicera japonica | GWHAAZE00000004 | 3 | CH_lonja_412 | 3 | 6 | 0.0000601969 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 3 | CH_lsa_340 | 3 | 4 | 0.0000519067 |
| Nicotiana tabacum | Nitab4.5_0000093 | 3 | CH_nta_55 | 3 | 3 | 0.00000516548 |
| Nicotiana tabacum | Nitab4.5_0000396 | 3 | CH_nta_77 | 3 | 5 | 0.0000516066 |
| Petunia axillaris | Peaxi162Scf00216 | 3 | CH_pax_38 | 5 | 6 | 0.0000000000889692 |
| Punica granatum | NC_045129.1 | 3 | CH_pgr_221 | 3 | 3 | 0.0000149576 |
| Trochodendron aralioides | group14 | 3 | CH_tar_319 | 3 | 5 | 0.000176915 |
| Vitis vinifera | chr7 | 3 | CH_vvi_251 | 3 | 4 | 0.0000461452 |
| Acer truncatum | chr3 | 4 | CH_acertr_51 | 5 | 6 | 0.0000000000292598 |
| Avicennia marina | ScioBoG_3895_HRSCAF_3912 | 4 | CH_ama_19 | 4 | 5 | 0.00000012155 |
| Avicennia marina | ScioBoG_102836_HRSCAF_103072 | 4 | CH_ama_47 | 3 | 3 | 0.0000256491 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 4 | CH_bvu_78 | 4 | 5 | 0.0000000412242 |
| Camellia sinensis var. sinensis | Chr1 | 4 | CH_camsi_469 | 3 | 4 | 0.0000290057 |
| Chara braunii | BFEA01000246 | 4 | CH_cbr_51 | 3 | 4 | 0.000000620768 |
| Coffea canephora | chr2 | 4 | CH_ccan_399 | 3 | 47 | 0.000891527 |
| Citrullus lanatus | CG_Chr01 | 4 | CH_cla_79 | 3 | 3 | 0.00000802747 |
| Cucumis melo | chr08 | 4 | CH_cme_129 | 3 | 3 | 0.00000453954 |
| Cucumis sativus L. | chr6 | 4 | CH_csa_139 | 3 | 3 | 0.00000585356 |
| Eucalyptus grandis | Chr08 | 4 | CH_egr_92 | 8 | 11 | 9.23817e-21 |
| Helianthus annuus | HanXRQChr11 | 4 | CH_han_243 | 4 | 5 | 0.0000000711577 |
| Lotus japonicus | chr2 | 4 | CH_lja_103 | 4 | 6 | 0.000000145547 |
| Lonicera japonica | GWHAAZE00000004 | 4 | CH_lonja_412 | 3 | 6 | 0.0000601969 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 4 | CH_lsa_340 | 3 | 4 | 0.0000519067 |
| Nicotiana tabacum | Nitab4.5_0000093 | 4 | CH_nta_55 | 3 | 3 | 0.00000516548 |
| Nicotiana tabacum | Nitab4.5_0000396 | 4 | CH_nta_77 | 3 | 5 | 0.0000516066 |
| Petunia axillaris | Peaxi162Scf00216 | 4 | CH_pax_38 | 5 | 6 | 0.0000000000889692 |
| Punica granatum | NC_045129.1 | 4 | CH_pgr_221 | 3 | 3 | 0.0000149576 |
| Trochodendron aralioides | group14 | 4 | CH_tar_319 | 3 | 5 | 0.000176915 |
| Vitis vinifera | chr7 | 4 | CH_vvi_251 | 3 | 4 | 0.0000461452 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0045048 | protein insertion into ER membrane | 4 |
| GO:0071784 | endoplasmic reticulum cisternal network assembly | 10 |
| GO:0071786 | endoplasmic reticulum tubular network organization | 2 |
| GO:0090158 | endoplasmic reticulum membrane organization | 44 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |