Functional clusters

Information

  • Type Gene Ontology
  • Description protein-containing complex subunit organization

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 3 CH_aag_150 5 8 0.000359834
Camellia sinensis var. sinensis Chr8 3 CH_camsi_715 7 23 0.000357615
Corylus avellana 2 3 CH_cav_351 6 13 0.000273276
Citrus clementina scaffold_2 3 CH_ccl_321 6 11 0.0000903994
Lotus japonicus chr1 3 CH_lja_366 8 32 0.000810945
Populus trichocarpa Chr01 3 CH_ptr_402 6 12 0.000346809
Quercus lobata 11 3 CH_qlo_987 6 15 0.000595947
Solanum lycopersicum SL4.0ch01 3 CH_sly_562 7 16 0.000812496
Anthoceros agrestis Sc2ySwM_344 4 CH_aag_150 5 8 0.000359834
Camellia sinensis var. sinensis Chr8 4 CH_camsi_715 7 23 0.000357615
Corylus avellana 2 4 CH_cav_351 6 13 0.000273276
Citrus clementina scaffold_2 4 CH_ccl_321 6 11 0.0000903994
Lotus japonicus chr1 4 CH_lja_366 8 32 0.000810945
Populus trichocarpa Chr01 4 CH_ptr_402 6 12 0.000346809
Quercus lobata 11 4 CH_qlo_987 6 15 0.000595947
Solanum lycopersicum SL4.0ch01 4 CH_sly_562 7 16 0.000812496

Available child term results

Ontology identifier Description Number of clusters
GO:0000027 ribosomal large subunit assembly 6
GO:0000028 ribosomal small subunit assembly 12
GO:0000244 spliceosomal tri-snRNP complex assembly 20
GO:0000245 spliceosomal complex assembly 24
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0000354 cis assembly of pre-catalytic spliceosome 2
GO:0000387 spliceosomal snRNP assembly 2
GO:0000395 mRNA 5'-splice site recognition 2
GO:0000492 box C/D snoRNP assembly 6
GO:0000493 box H/ACA snoRNP assembly 6
GO:0001188 RNA polymerase I preinitiation complex assembly 8
GO:0001731 formation of translation preinitiation complex 14
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006334 nucleosome assembly 46
GO:0006335 DNA replication-dependent nucleosome assembly 12
GO:0006336 DNA replication-independent nucleosome assembly 16
GO:0006337 nucleosome disassembly 2
GO:0006376 mRNA splice site selection 8
GO:0006415 translational termination 12
GO:0007019 microtubule depolymerization 8
GO:0007021 tubulin complex assembly 12
GO:0010190 cytochrome b6f complex assembly 2
GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly 2
GO:0010265 SCF complex assembly 12
GO:0010270 photosystem II oxygen evolving complex assembly 8
GO:0010275 NAD(P)H dehydrogenase complex assembly 2
GO:0010387 COP9 signalosome assembly 14
GO:0010968 regulation of microtubule nucleation 20
GO:0016584 nucleosome positioning 2
GO:0017004 cytochrome complex assembly 30
GO:0030042 actin filament depolymerization 14
GO:0030833 regulation of actin filament polymerization 10
GO:0031116 positive regulation of microtubule polymerization 4
GO:0031117 positive regulation of microtubule depolymerization 10
GO:0031508 pericentric heterochromatin assembly 18
GO:0032981 mitochondrial respiratory chain complex I assembly 6
GO:0032984 protein-containing complex disassembly 4
GO:0033614 chloroplast proton-transporting ATP synthase complex assembly 6
GO:0033617 mitochondrial cytochrome c oxidase assembly 4
GO:0034080 CENP-A containing nucleosome assembly 4
GO:0034214 protein hexamerization 4
GO:0034314 Arp2/3 complex-mediated actin nucleation 12
GO:0034462 small-subunit processome assembly 2
GO:0034508 centromere complex assembly 2
GO:0034553 mitochondrial respiratory chain complex II assembly 2
GO:0034622 cellular protein-containing complex assembly 6
GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA 4
GO:0035494 SNARE complex disassembly 32
GO:0043244 regulation of protein-containing complex disassembly 2
GO:0043248 proteasome assembly 16
GO:0043254 regulation of protein-containing complex assembly 2
GO:0043461 proton-transporting ATP synthase complex assembly 6
GO:0043486 histone exchange 14
GO:0045010 actin nucleation 2
GO:0045905 positive regulation of translational termination 2
GO:0048208 COPII vesicle coating 56
GO:0048564 photosystem I assembly 6
GO:0051123 RNA polymerase II preinitiation complex assembly 12
GO:0051127 positive regulation of actin nucleation 2
GO:0051131 chaperone-mediated protein complex assembly 12
GO:0051259 protein complex oligomerization 30
GO:0051260 protein homooligomerization 12
GO:0051290 protein heterotetramerization 16
GO:0051382 kinetochore assembly 4
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0065003 protein-containing complex assembly 2
GO:0070071 proton-transporting two-sector ATPase complex assembly 2
GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly 2
GO:0070682 proteasome regulatory particle assembly 6
GO:0070897 transcription preinitiation complex assembly 4
GO:0090063 positive regulation of microtubule nucleation 4
GO:0097250 mitochondrial respirasome assembly 6
GO:0110102 ribulose bisphosphate carboxylase complex assembly 56
GO:1903099 positive regulation of CENP-A containing nucleosome assembly 6
GO:1903259 exon-exon junction complex disassembly 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001