Functional clusters

Information

  • Type Gene Ontology
  • Description membrane invagination

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC03 3 CH_bca_91 4 6 0.0000000000553804
Brassica napus A02 3 CH_bna_489 2 3 0.000167052
Cannabis sativa NC_044378.1 3 CH_cansat_224 2 2 0.0000656642
Corylus avellana 11 3 CH_cav_366 2 4 0.000459982
Citrus clementina scaffold_1 3 CH_ccl_317 2 2 0.0000820311
Cardamine hirsuta Chr6 3 CH_chi_233 2 2 0.0000691204
Citrullus lanatus CG_Chr08 3 CH_cla_112 2 2 0.0000887115
Chenopodium quinoa C_Quinoa_Scaffold_1995 3 CH_cqu_437 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_1206 3 CH_cqu_438 2 2 0.000284293
Capsella rubella scaffold_6 3 CH_cru_225 2 2 0.0000731154
Davidia involucrata GWHABJS00000003 3 CH_din_423 2 4 0.00090015
Erigeron canadensis Conyza_canadensis_scaffold:1 3 CH_eca_400 2 3 0.000403835
Erythranthe guttata scaffold_1 3 CH_egut_377 2 2 0.000436888
Fragaria vesca Fvb2 3 CH_fve_296 2 2 0.00017673
Lonicera japonica GWHAAZE00000008 3 CH_lonja_408 2 2 0.0000598874
Lactuca sativa Lsat_1_v8_lg_6 3 CH_lsa_24 6 7 5.6523e-20
Malus domestica Chr15 3 CH_mdo_153 3 3 0.00000000862825
Marchantia polymorpha scaffold_85 3 CH_mpo_87 2 2 0.000110442
Prunus persica Pp01 3 CH_ppe_163 3 3 0.00000000834721
Pisum sativum chr5LG3 3 CH_psa_65 3 3 0.00000000408165
Simmondsia chinensis GWHAASQ00000023 3 CH_sci_163 2 2 0.0000851426
Sechium edule LG03 3 CH_sed_247 2 2 0.000428052
Trochodendron aralioides group10 3 CH_tar_85 3 3 0.00000000540676
Trifolium pratense Tp57577_TGAC_v2_LG7 3 CH_tpr_59 3 3 0.00000000859546
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_305 2 2 0.000278772
Brassica carinata ChrC03 4 CH_bca_91 4 6 0.0000000000553804
Brassica napus A02 4 CH_bna_489 2 3 0.000167052
Cannabis sativa NC_044378.1 4 CH_cansat_224 2 2 0.0000656642
Corylus avellana 11 4 CH_cav_366 2 4 0.000459982
Citrus clementina scaffold_1 4 CH_ccl_317 2 2 0.0000820311
Cardamine hirsuta Chr6 4 CH_chi_233 2 2 0.0000691204
Citrullus lanatus CG_Chr08 4 CH_cla_112 2 2 0.0000887115
Chenopodium quinoa C_Quinoa_Scaffold_1995 4 CH_cqu_437 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_1206 4 CH_cqu_438 2 2 0.000284293
Capsella rubella scaffold_6 4 CH_cru_225 2 2 0.0000731154
Davidia involucrata GWHABJS00000003 4 CH_din_423 2 4 0.00090015
Erigeron canadensis Conyza_canadensis_scaffold:1 4 CH_eca_400 2 3 0.000403835
Erythranthe guttata scaffold_1 4 CH_egut_377 2 2 0.000436888
Fragaria vesca Fvb2 4 CH_fve_296 2 2 0.00017673
Lonicera japonica GWHAAZE00000008 4 CH_lonja_408 2 2 0.0000598874
Lactuca sativa Lsat_1_v8_lg_6 4 CH_lsa_24 6 7 5.6523e-20
Malus domestica Chr15 4 CH_mdo_153 3 3 0.00000000862825
Marchantia polymorpha scaffold_85 4 CH_mpo_87 2 2 0.000110442
Prunus persica Pp01 4 CH_ppe_163 3 3 0.00000000834721
Pisum sativum chr5LG3 4 CH_psa_65 3 3 0.00000000408165
Simmondsia chinensis GWHAASQ00000023 4 CH_sci_163 2 2 0.0000851426
Sechium edule LG03 4 CH_sed_247 2 2 0.000428052
Trochodendron aralioides group10 4 CH_tar_85 3 3 0.00000000540676
Trifolium pratense Tp57577_TGAC_v2_LG7 4 CH_tpr_59 3 3 0.00000000859546
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_305 2 2 0.000278772

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001