Functional clusters

Information

  • Type Gene Ontology
  • Description ribosome biogenesis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB07 3 CH_bca_722 4 5 0.000231089
Citrus clementina scaffold_3 3 CH_ccl_275 6 20 0.0000414253
Lactuca sativa Lsat_1_v8_lg_9 3 CH_lsa_466 4 7 0.000520526
Papaver somniferum NW_020624377.1 3 CH_pso_162 7 10 0.000000000918348
Papaver somniferum NC_039362.1 3 CH_pso_190 8 20 0.00000000466161
Papaver somniferum NW_020625486.1 3 CH_pso_447 4 4 0.0000599296
Papaver somniferum NC_039360.1 3 CH_pso_568 7 44 0.000252326
Phaseolus vulgaris Chr08 3 CH_pvu_271 4 5 0.000172034
Salix brachista GWHAAZH00000017 3 CH_sbr_75 9 29 0.00000000166081
Sapria himalayana scaffold1_25991295 3 CH_shi_104 4 5 0.00000420656
Vanilla planifolia CM028155.1 3 CH_vpl_246 4 5 0.00018823
Brassica carinata ChrB07 4 CH_bca_722 4 5 0.000231089
Citrus clementina scaffold_3 4 CH_ccl_275 6 20 0.0000414253
Lactuca sativa Lsat_1_v8_lg_9 4 CH_lsa_466 4 7 0.000520526
Papaver somniferum NW_020624377.1 4 CH_pso_162 7 10 0.000000000918348
Papaver somniferum NC_039362.1 4 CH_pso_190 8 20 0.00000000466161
Papaver somniferum NW_020625486.1 4 CH_pso_447 4 4 0.0000599296
Papaver somniferum NC_039360.1 4 CH_pso_568 7 44 0.000252326
Phaseolus vulgaris Chr08 4 CH_pvu_271 4 5 0.000172034
Salix brachista GWHAAZH00000017 4 CH_sbr_75 9 29 0.00000000166081
Sapria himalayana scaffold1_25991295 4 CH_shi_104 4 5 0.00000420656
Vanilla planifolia CM028155.1 4 CH_vpl_246 4 5 0.00018823

Available child term results

Ontology identifier Description Number of clusters
GO:0000027 ribosomal large subunit assembly 6
GO:0000028 ribosomal small subunit assembly 12
GO:0000055 ribosomal large subunit export from nucleus 38
GO:0000056 ribosomal small subunit export from nucleus 22
GO:0000154 rRNA modification 10
GO:0000453 enzyme-directed rRNA 2'-O-methylation 2
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 16
GO:0000469 cleavage involved in rRNA processing 2
GO:0000481 maturation of 5S rRNA 2
GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 2
GO:0002103 endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 4
GO:0006364 rRNA processing 10
GO:0034462 small-subunit processome assembly 2
GO:0042255 ribosome assembly 2
GO:0042256 mature ribosome assembly 14
GO:0042273 ribosomal large subunit biogenesis 4
GO:0090069 regulation of ribosome biogenesis 4
GO:0090070 positive regulation of ribosome biogenesis 6
GO:2000232 regulation of rRNA processing 10
GO:2000234 positive regulation of rRNA processing 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001