Functional clusters

Information

  • Type Gene Ontology
  • Description cellular response to stimulus

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr8 3 CH_acertr_524 20 74 0.000962995
Brassica carinata ChrB08 3 CH_bca_653 12 28 0.000159441
Brassica carinata ChrC07 3 CH_bca_983 13 38 0.000888727
Brassica napus A09 3 CH_bna_447 14 39 0.0000773292
Brassica rapa A09 3 CH_bra_138 18 46 0.00000744025
Lactuca sativa Lsat_1_v8_lg_3 3 CH_lsa_505 7 8 0.000916996
Rhododendron simsii chr01 3 CH_rsi_434 21 77 0.000280959
Solanum tuberosum ST4.03ch10 3 CH_stu_311 20 55 0.00000973059
Acer truncatum chr8 4 CH_acertr_524 20 74 0.000962995
Brassica carinata ChrB08 4 CH_bca_653 12 28 0.000159441
Brassica carinata ChrC07 4 CH_bca_983 13 38 0.000888727
Brassica napus A09 4 CH_bna_447 14 39 0.0000773292
Brassica rapa A09 4 CH_bra_138 18 46 0.00000744025
Lactuca sativa Lsat_1_v8_lg_3 4 CH_lsa_505 7 8 0.000916996
Rhododendron simsii chr01 4 CH_rsi_434 21 77 0.000280959
Solanum tuberosum ST4.03ch10 4 CH_stu_311 20 55 0.00000973059

Available child term results

Ontology identifier Description Number of clusters
GO:0000012 single strand break repair 6
GO:0000160 phosphorelay signal transduction system 24
GO:0000706 meiotic DNA double-strand break processing 4
GO:0000719 photoreactive repair 12
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair 2
GO:0000724 double-strand break repair via homologous recombination 6
GO:0000731 DNA synthesis involved in DNA repair 4
GO:0002220 innate immune response activating cell surface receptor signaling pathway 16
GO:0002221 pattern recognition receptor signaling pathway 6
GO:0002752 cell surface pattern recognition receptor signaling pathway 4
GO:0002758 innate immune response-activating signal transduction 30
GO:0006281 DNA repair 16
GO:0006282 regulation of DNA repair 2
GO:0006283 transcription-coupled nucleotide-excision repair 6
GO:0006289 nucleotide-excision repair 8
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006303 double-strand break repair via nonhomologous end joining 2
GO:0006805 xenobiotic metabolic process 4
GO:0006974 cellular response to DNA damage stimulus 6
GO:0006983 ER overload response 10
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0006995 cellular response to nitrogen starvation 18
GO:0007094 mitotic spindle assembly checkpoint signaling 8
GO:0007095 mitotic G2 DNA damage checkpoint signaling 8
GO:0007165 signal transduction 16
GO:0007166 cell surface receptor signaling pathway 18
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway 12
GO:0007186 G protein-coupled receptor signaling pathway 20
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway 10
GO:0007219 Notch signaling pathway 4
GO:0007264 small GTPase mediated signal transduction 10
GO:0009267 cellular response to starvation 4
GO:0009585 red, far-red light phototransduction 4
GO:0009626 plant-type hypersensitive response 18
GO:0009734 auxin-activated signaling pathway 74
GO:0009736 cytokinin-activated signaling pathway 16
GO:0009738 abscisic acid-activated signaling pathway 10
GO:0009740 gibberellic acid mediated signaling pathway 6
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009745 sucrose mediated signaling 28
GO:0009747 hexokinase-dependent signaling 6
GO:0009755 hormone-mediated signaling pathway 2
GO:0009785 blue light signaling pathway 2
GO:0009787 regulation of abscisic acid-activated signaling pathway 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 12
GO:0009863 salicylic acid mediated signaling pathway 4
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009873 ethylene-activated signaling pathway 216
GO:0009937 regulation of gibberellic acid mediated signaling pathway 8
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0009966 regulation of signal transduction 8
GO:0009970 cellular response to sulfate starvation 4
GO:0010018 far-red light signaling pathway 6
GO:0010104 regulation of ethylene-activated signaling pathway 20
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010106 cellular response to iron ion starvation 4
GO:0010213 non-photoreactive DNA repair 2
GO:0010315 auxin efflux 16
GO:0010363 regulation of plant-type hypersensitive response 2
GO:0010421 hydrogen peroxide-mediated programmed cell death 26
GO:0010438 cellular response to sulfur starvation 12
GO:0010569 regulation of double-strand break repair via homologous recombination 8
GO:0010767 regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage 4
GO:0010777 meiotic mismatch repair involved in reciprocal meiotic recombination 8
GO:0016036 cellular response to phosphate starvation 4
GO:0019430 removal of superoxide radicals 2
GO:0019722 calcium-mediated signaling 6
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0030845 phospholipase C-inhibiting G protein-coupled receptor signaling pathway 84
GO:0030968 endoplasmic reticulum unfolded protein response 70
GO:0031567 mitotic cell size control checkpoint signaling 6
GO:0031570 DNA integrity checkpoint signaling 4
GO:0031663 lipopolysaccharide-mediated signaling pathway 2
GO:0031669 cellular response to nutrient levels 2
GO:0031848 protection from non-homologous end joining at telomere 2
GO:0032008 positive regulation of TOR signaling 4
GO:0032012 regulation of ARF protein signal transduction 10
GO:0032055 negative regulation of translation in response to stress 2
GO:0032870 cellular response to hormone stimulus 2
GO:0033314 mitotic DNA replication checkpoint signaling 16
GO:0033316 meiotic spindle assembly checkpoint signaling 2
GO:0033554 cellular response to stress 16
GO:0034051 negative regulation of plant-type hypersensitive response 2
GO:0034052 positive regulation of plant-type hypersensitive response 2
GO:0034224 cellular response to zinc ion starvation 8
GO:0034263 positive regulation of autophagy in response to ER overload 2
GO:0034599 cellular response to oxidative stress 22
GO:0034605 cellular response to heat 6
GO:0034614 cellular response to reactive oxygen species 6
GO:0034620 cellular response to unfolded protein 20
GO:0034644 cellular response to UV 2
GO:0034976 response to endoplasmic reticulum stress 20
GO:0035024 negative regulation of Rho protein signal transduction 2
GO:0035556 intracellular signal transduction 22
GO:0035865 cellular response to potassium ion 2
GO:0035874 cellular response to copper ion starvation 6
GO:0035967 cellular response to topologically incorrect protein 2
GO:0036297 interstrand cross-link repair 12
GO:0042149 cellular response to glucose starvation 2
GO:0042178 xenobiotic catabolic process 10
GO:0042276 error-prone translesion synthesis 36
GO:0042631 cellular response to water deprivation 14
GO:0043247 telomere maintenance in response to DNA damage 8
GO:0043407 negative regulation of MAP kinase activity 2
GO:0043562 cellular response to nitrogen levels 2
GO:0043617 cellular response to sucrose starvation 2
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0045003 double-strand break repair via synthesis-dependent strand annealing 2
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045739 positive regulation of DNA repair 4
GO:0048015 phosphatidylinositol-mediated signaling 14
GO:0048016 inositol phosphate-mediated signaling 2
GO:0051103 DNA ligation involved in DNA repair 24
GO:0051365 cellular response to potassium ion starvation 6
GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning 2
GO:0062207 regulation of pattern recognition receptor signaling pathway 2
GO:0070417 cellular response to cold 10
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 4
GO:0070887 cellular response to chemical stimulus 8
GO:0071215 cellular response to abscisic acid stimulus 6
GO:0071217 cellular response to external biotic stimulus 10
GO:0071219 cellular response to molecule of bacterial origin 6
GO:0071226 cellular response to molecule of fungal origin 4
GO:0071230 cellular response to amino acid stimulus 6
GO:0071242 cellular response to ammonium ion 4
GO:0071249 cellular response to nitrate 10
GO:0071258 cellular response to gravity 12
GO:0071260 cellular response to mechanical stimulus 2
GO:0071275 cellular response to aluminum ion 2
GO:0071277 cellular response to calcium ion 10
GO:0071280 cellular response to copper ion 8
GO:0071284 cellular response to lead ion 8
GO:0071287 cellular response to manganese ion 26
GO:0071289 cellular response to nickel ion 20
GO:0071291 cellular response to selenium ion 8
GO:0071294 cellular response to zinc ion 8
GO:0071323 cellular response to chitin 12
GO:0071327 cellular response to trehalose stimulus 22
GO:0071332 cellular response to fructose stimulus 2
GO:0071333 cellular response to glucose stimulus 8
GO:0071345 cellular response to cytokine stimulus 2
GO:0071360 cellular response to exogenous dsRNA 8
GO:0071367 cellular response to brassinosteroid stimulus 4
GO:0071369 cellular response to ethylene stimulus 8
GO:0071370 cellular response to gibberellin stimulus 6
GO:0071395 cellular response to jasmonic acid stimulus 4
GO:0071398 cellular response to fatty acid 4
GO:0071446 cellular response to salicylic acid stimulus 30
GO:0071452 cellular response to singlet oxygen 2
GO:0071454 cellular response to anoxia 4
GO:0071456 cellular response to hypoxia 48
GO:0071457 cellular response to ozone 2
GO:0071472 cellular response to salt stress 2
GO:0071475 cellular hyperosmotic salinity response 6
GO:0071490 cellular response to far red light 98
GO:0071492 cellular response to UV-A 2
GO:0071493 cellular response to UV-B 12
GO:0071494 cellular response to UV-C 6
GO:0071497 cellular response to freezing 8
GO:0071588 hydrogen peroxide mediated signaling pathway 6
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 4
GO:0072423 response to DNA damage checkpoint signaling 20
GO:0072732 cellular response to calcium ion starvation 74
GO:0072756 cellular response to paraquat 8
GO:0080036 regulation of cytokinin-activated signaling pathway 10
GO:0080037 negative regulation of cytokinin-activated signaling pathway 24
GO:0080038 positive regulation of cytokinin-activated signaling pathway 2
GO:0080040 positive regulation of cellular response to phosphate starvation 18
GO:0080135 regulation of cellular response to stress 4
GO:0080149 sucrose induced translational repression 2
GO:0080151 positive regulation of salicylic acid mediated signaling pathway 2
GO:0080169 cellular response to boron-containing substance deprivation 2
GO:0090227 regulation of red or far-red light signaling pathway 4
GO:0090228 positive regulation of red or far-red light signaling pathway 14
GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint 2
GO:0097468 programmed cell death in response to reactive oxygen species 4
GO:0097510 base-excision repair, AP site formation via deaminated base removal 12
GO:0098869 cellular oxidant detoxification 16
GO:0106167 extracellular ATP signaling 2
GO:0140426 PAMP-triggered immunity signalling pathway 2
GO:1900034 regulation of cellular response to heat 6
GO:1900035 negative regulation of cellular response to heat 2
GO:1900036 positive regulation of cellular response to heat 2
GO:1900039 positive regulation of cellular response to hypoxia 4
GO:1900067 regulation of cellular response to alkaline pH 8
GO:1900070 negative regulation of cellular hyperosmotic salinity response 16
GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response 2
GO:1900409 positive regulation of cellular response to oxidative stress 12
GO:1900457 regulation of brassinosteroid mediated signaling pathway 6
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1901181 negative regulation of cellular response to caffeine 2
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 16
GO:1901528 hydrogen peroxide mediated signaling pathway involved in stomatal movement 16
GO:1901699 cellular response to nitrogen compound 4
GO:1901701 cellular response to oxygen-containing compound 4
GO:1902348 cellular response to strigolactone 6
GO:1902531 regulation of intracellular signal transduction 2
GO:1902659 regulation of glucose mediated signaling pathway 4
GO:1904263 positive regulation of TORC1 signaling 4
GO:1904292 regulation of ERAD pathway 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1905168 positive regulation of double-strand break repair via homologous recombination 4
GO:1990748 cellular detoxification 2
GO:1990918 double-strand break repair involved in meiotic recombination 2
GO:2000022 regulation of jasmonic acid mediated signaling pathway 18
GO:2000031 regulation of salicylic acid mediated signaling pathway 16
GO:2000042 negative regulation of double-strand break repair via homologous recombination 4
GO:2000685 positive regulation of cellular response to X-ray 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001