Functional clusters
Information
- Type Gene Ontology
- Description cellular response to far red light
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-8 | 3 | CH_aar_60 | 3 | 3 | 0.0000000124856 |
| Acer truncatum | chr4 | 3 | CH_acertr_4 | 9 | 15 | 4.33141e-27 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 3 | CH_amhyb_100 | 2 | 2 | 0.0000841751 |
| Brassica carinata | ChrC01 | 3 | CH_bca_122 | 4 | 9 | 0.00000000121807 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 3 | CH_bvu_65 | 3 | 3 | 0.0000000102821 |
| Camellia sinensis var. sinensis | Chr5 | 3 | CH_camsi_494 | 2 | 2 | 0.0000458547 |
| Cannabis sativa | NC_044376.1 | 3 | CH_cansat_60 | 4 | 8 | 0.0000000000594553 |
| Citrus clementina | scaffold_9 | 3 | CH_ccl_298 | 2 | 2 | 0.0000820311 |
| Ceratophyllum demersum | 3 | 3 | CH_cde_5 | 5 | 5 | 0.00000000000000175136 |
| Carpinus fangiana | Cfa03 | 3 | CH_cfa_62 | 4 | 10 | 0.000000000273637 |
| Carya illinoinensis | Chr02 | 3 | CH_cil_156 | 3 | 3 | 0.00000000576299 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2000 | 3 | CH_cqu_424 | 2 | 2 | 0.000284293 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3973 | 3 | CH_cqu_546 | 2 | 3 | 0.000852831 |
| Capsella rubella | scaffold_7 | 3 | CH_cru_98 | 3 | 3 | 0.0000000320764 |
| Daucus carota | DCARv2_Chr9 | 3 | CH_dca_290 | 2 | 2 | 0.000191333 |
| Davidia involucrata | GWHABJS00000016 | 3 | CH_din_232 | 2 | 2 | 0.0000500125 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 3 | CH_eca_21 | 4 | 4 | 0.000000000000271071 |
| Eucalyptus grandis | Chr02 | 3 | CH_egr_286 | 4 | 6 | 0.0000000000451093 |
| Eucalyptus grandis | Chr02 | 3 | CH_egr_881 | 2 | 2 | 0.000877912 |
| Eutrema salsugineum | scaffold_1 | 3 | CH_esa_257 | 2 | 3 | 0.000685305 |
| Fragaria x ananassa | Fvb2-2 | 3 | CH_fan_176 | 3 | 4 | 0.000000451918 |
| Fragaria vesca | Fvb2 | 3 | CH_fve_150 | 3 | 5 | 0.0000005205 |
| Helianthus annuus | HanXRQChr03 | 3 | CH_han_101 | 5 | 10 | 0.00000000000333601 |
| Helianthus annuus | HanXRQChr03 | 3 | CH_han_223 | 4 | 11 | 0.0000000282513 |
| Lonicera japonica | GWHAAZE00000003 | 3 | CH_lonja_121 | 4 | 5 | 0.00000000000322199 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 3 | CH_lsa_17 | 7 | 11 | 4.79402e-22 |
| Malus domestica | Chr13 | 3 | CH_mdo_269 | 3 | 6 | 0.000000862666 |
| Marchantia polymorpha | scaffold_47 | 3 | CH_mpo_99 | 2 | 3 | 0.000331309 |
| Medicago truncatula | chr1 | 3 | CH_mtr_107 | 5 | 23 | 0.000000000000718978 |
| Petunia axillaris | Peaxi162Scf00316 | 3 | CH_pax_5 | 7 | 9 | 3.4399e-22 |
| Physcomitrium patens | Chr16 | 3 | CH_ppa_115 | 3 | 7 | 0.000160599 |
| Physcomitrium patens | Chr03 | 3 | CH_ppa_22 | 4 | 6 | 0.0000000316555 |
| Prunus persica | Pp01 | 3 | CH_ppe_52 | 5 | 5 | 0.00000000000000139373 |
| Pisum sativum | chr6LG2 | 3 | CH_psa_35 | 5 | 24 | 0.00000000000235557 |
| Papaver somniferum | NC_039362.1 | 3 | CH_pso_184 | 4 | 8 | 0.00000000327659 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_279 | 3 | 3 | 0.000000346422 |
| Populus trichocarpa | Chr08 | 3 | CH_ptr_82 | 4 | 4 | 0.000000000000579356 |
| Quercus lobata | 6 | 3 | CH_qlo_287 | 5 | 70 | 0.000000000643949 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 3 | CH_rch_130 | 4 | 4 | 0.00000000000285116 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_737 | 2 | 2 | 0.000597979 |
| Rhododendron simsii | chr02 | 3 | CH_rsi_10 | 10 | 10 | 1.37688e-34 |
| Salix brachista | GWHAAZH00000008 | 3 | CH_sbr_127 | 3 | 4 | 0.000000095296 |
| Simmondsia chinensis | GWHAASQ00000013 | 3 | CH_sci_147 | 2 | 2 | 0.0000851426 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_102 | 8 | 18 | 1.48025e-21 |
| Solanum lycopersicum | SL4.0ch09 | 3 | CH_sly_336 | 2 | 2 | 0.0000586941 |
| Solanum pennellii | Spenn-ch09 | 3 | CH_spe_273 | 2 | 2 | 0.000044479 |
| Selenicereus undatus | Scaffold_33677 | 3 | CH_sun_181 | 2 | 4 | 0.000435951 |
| Trochodendron aralioides | group1 | 3 | CH_tar_9 | 7 | 10 | 3.54113e-21 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_35 | 4 | 4 | 0.00000000000240748 |
| Aethionema arabicum | LG-8 | 4 | CH_aar_60 | 3 | 3 | 0.0000000124856 |
| Acer truncatum | chr4 | 4 | CH_acertr_4 | 9 | 15 | 4.33141e-27 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 4 | CH_amhyb_100 | 2 | 2 | 0.0000841751 |
| Brassica carinata | ChrC01 | 4 | CH_bca_122 | 4 | 9 | 0.00000000121807 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 4 | CH_bvu_65 | 3 | 3 | 0.0000000102821 |
| Camellia sinensis var. sinensis | Chr5 | 4 | CH_camsi_494 | 2 | 2 | 0.0000458547 |
| Cannabis sativa | NC_044376.1 | 4 | CH_cansat_60 | 4 | 8 | 0.0000000000594553 |
| Citrus clementina | scaffold_9 | 4 | CH_ccl_298 | 2 | 2 | 0.0000820311 |
| Ceratophyllum demersum | 3 | 4 | CH_cde_5 | 5 | 5 | 0.00000000000000175136 |
| Carpinus fangiana | Cfa03 | 4 | CH_cfa_62 | 4 | 10 | 0.000000000273637 |
| Carya illinoinensis | Chr02 | 4 | CH_cil_156 | 3 | 3 | 0.00000000576299 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2000 | 4 | CH_cqu_424 | 2 | 2 | 0.000284293 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3973 | 4 | CH_cqu_546 | 2 | 3 | 0.000852831 |
| Capsella rubella | scaffold_7 | 4 | CH_cru_98 | 3 | 3 | 0.0000000320764 |
| Daucus carota | DCARv2_Chr9 | 4 | CH_dca_290 | 2 | 2 | 0.000191333 |
| Davidia involucrata | GWHABJS00000016 | 4 | CH_din_232 | 2 | 2 | 0.0000500125 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 4 | CH_eca_21 | 4 | 4 | 0.000000000000271071 |
| Eucalyptus grandis | Chr02 | 4 | CH_egr_286 | 4 | 6 | 0.0000000000451093 |
| Eucalyptus grandis | Chr02 | 4 | CH_egr_881 | 2 | 2 | 0.000877912 |
| Eutrema salsugineum | scaffold_1 | 4 | CH_esa_257 | 2 | 3 | 0.000685305 |
| Fragaria x ananassa | Fvb2-2 | 4 | CH_fan_176 | 3 | 4 | 0.000000451918 |
| Fragaria vesca | Fvb2 | 4 | CH_fve_150 | 3 | 5 | 0.0000005205 |
| Helianthus annuus | HanXRQChr03 | 4 | CH_han_101 | 5 | 10 | 0.00000000000333601 |
| Helianthus annuus | HanXRQChr03 | 4 | CH_han_223 | 4 | 11 | 0.0000000282513 |
| Lonicera japonica | GWHAAZE00000003 | 4 | CH_lonja_121 | 4 | 5 | 0.00000000000322199 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 4 | CH_lsa_17 | 7 | 11 | 4.79402e-22 |
| Malus domestica | Chr13 | 4 | CH_mdo_269 | 3 | 6 | 0.000000862666 |
| Marchantia polymorpha | scaffold_47 | 4 | CH_mpo_99 | 2 | 3 | 0.000331309 |
| Medicago truncatula | chr1 | 4 | CH_mtr_107 | 5 | 23 | 0.000000000000718978 |
| Petunia axillaris | Peaxi162Scf00316 | 4 | CH_pax_5 | 7 | 9 | 3.4399e-22 |
| Physcomitrium patens | Chr16 | 4 | CH_ppa_115 | 3 | 7 | 0.000160599 |
| Physcomitrium patens | Chr03 | 4 | CH_ppa_22 | 4 | 6 | 0.0000000316555 |
| Prunus persica | Pp01 | 4 | CH_ppe_52 | 5 | 5 | 0.00000000000000139373 |
| Pisum sativum | chr6LG2 | 4 | CH_psa_35 | 5 | 24 | 0.00000000000235557 |
| Papaver somniferum | NC_039362.1 | 4 | CH_pso_184 | 4 | 8 | 0.00000000327659 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_279 | 3 | 3 | 0.000000346422 |
| Populus trichocarpa | Chr08 | 4 | CH_ptr_82 | 4 | 4 | 0.000000000000579356 |
| Quercus lobata | 6 | 4 | CH_qlo_287 | 5 | 70 | 0.000000000643949 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 4 | CH_rch_130 | 4 | 4 | 0.00000000000285116 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_737 | 2 | 2 | 0.000597979 |
| Rhododendron simsii | chr02 | 4 | CH_rsi_10 | 10 | 10 | 1.37688e-34 |
| Salix brachista | GWHAAZH00000008 | 4 | CH_sbr_127 | 3 | 4 | 0.000000095296 |
| Simmondsia chinensis | GWHAASQ00000013 | 4 | CH_sci_147 | 2 | 2 | 0.0000851426 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_102 | 8 | 18 | 1.48025e-21 |
| Solanum lycopersicum | SL4.0ch09 | 4 | CH_sly_336 | 2 | 2 | 0.0000586941 |
| Solanum pennellii | Spenn-ch09 | 4 | CH_spe_273 | 2 | 2 | 0.000044479 |
| Selenicereus undatus | Scaffold_33677 | 4 | CH_sun_181 | 2 | 4 | 0.000435951 |
| Trochodendron aralioides | group1 | 4 | CH_tar_9 | 7 | 10 | 3.54113e-21 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_35 | 4 | 4 | 0.00000000000240748 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0010018 | far-red light signaling pathway | 6 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |