Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Lupinus albus Lalb_Chr21 1 CH_lal_389 6 28 0.000767521
Selaginella moellendorffii scaffold_10 1 CH_smo_132 5 20 0.000311146
Selaginella moellendorffii scaffold_2 1 CH_smo_134 4 8 0.000375787
Zea mays 4 1 CH_zma_267 5 18 0.00067657
Lupinus albus Lalb_Chr21 2 CH_lal_389 6 28 0.000767521
Selaginella moellendorffii scaffold_10 2 CH_smo_132 5 20 0.000311146
Selaginella moellendorffii scaffold_2 2 CH_smo_134 4 8 0.000375787
Zea mays 4 2 CH_zma_267 5 18 0.00067657

Available child term results

Ontology identifier Description Number of clusters
25.1 Nutrient uptake.nitrogen assimilation 8
25.1.2 Nutrient uptake.nitrogen assimilation.nitrate uptake system 6
25.1.2.1 Nutrient uptake.nitrogen assimilation.nitrate uptake system.nitrate transceptor (NRT1.1) 34
25.1.2.2 Nutrient uptake.nitrogen assimilation.nitrate uptake system.signalling factor (NRG2) 4
25.1.2.3 Nutrient uptake.nitrogen assimilation.nitrate uptake system.transcriptional repressor (NIGT) 2
25.1.2.4.2 Nutrient uptake.nitrogen assimilation.nitrate uptake system.nitrate-CPK-NLP signalling network.transcription factor (NLP6/7) 8
25.1.2.6 Nutrient uptake.nitrogen assimilation.nitrate uptake system.regulatory factor (NRT3) 49
25.1.3.1 Nutrient uptake.nitrogen assimilation.nitrate assimilation.nitrate reductase 22
25.1.3.2 Nutrient uptake.nitrogen assimilation.nitrate assimilation.nitrite reductase 4
25.1.4.1.1 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamine synthetase activities.cytosolic glutamine synthetase (GLN1) 12
25.1.5.1 Nutrient uptake.nitrogen assimilation.glutamate deamination.glutamate dehydrogenase 14
25.1.6 Nutrient uptake.nitrogen assimilation.aspartate aminotransferase 22
25.2.1.1 Nutrient uptake.sulfur assimilation.sulfate assimilation.ATP sulfurylase (APS) 21
25.2.1.2 Nutrient uptake.sulfur assimilation.sulfate assimilation.adenosine phosphosulfate kinase (APK) 4
25.2.1.3 Nutrient uptake.sulfur assimilation.sulfate assimilation.(phospho)adenosine phosphosulfate reductase (APR) 6
25.2.1.4 Nutrient uptake.sulfur assimilation.sulfate assimilation.Fd-dependent sulfite reductase (SIR) 4
25.3 Nutrient uptake.phosphorus assimilation 34
25.3.1.2 Nutrient uptake.phosphorus assimilation.phosphate signalling.regulatory protein (SPX) 14
25.3.2 Nutrient uptake.phosphorus assimilation.phosphate uptake 6
25.3.2.3 Nutrient uptake.phosphorus assimilation.phosphate uptake.phosphate transporter trafficking factor (PHF1) 2
25.3.3.1 Nutrient uptake.phosphorus assimilation.phosphate homeostasis.E2 ubiquitin-conjugating protein (PHO2) 6
25.3.3.2 Nutrient uptake.phosphorus assimilation.phosphate homeostasis.E3 ubiquitin ligase (NLA) 28
25.4.1.1 Nutrient uptake.metal homeostasis.reduction-based strategy uptake.metal ion-chelate reductase (FRO) 85
25.4.1.2 Nutrient uptake.metal homeostasis.reduction-based strategy uptake.iron/zinc/manganese/cobalt cation uptake transporter (IRT) 25
25.4.2 Nutrient uptake.metal homeostasis.iron 6
25.4.2.1.1 Nutrient uptake.metal homeostasis.iron.regulation.iron-binding sensor (HRZ/BRUTUS) 8
25.4.2.1.2 Nutrient uptake.metal homeostasis.iron.regulation.signal transduction factor (PRI1) 2
25.4.2.1.3 Nutrient uptake.metal homeostasis.iron.regulation.IRT1-ubiquitin ligase (IDF1) 7
25.4.2.1.5 Nutrient uptake.metal homeostasis.iron.regulation.iron uptake regulator (FIT) 12
25.4.2.1.6 Nutrient uptake.metal homeostasis.iron.regulation.bHLH-Ib-class iron/copper homeostasis regulator 98
25.4.2.1.7 Nutrient uptake.metal homeostasis.iron.regulation.bHLH-IVa-class iron homeostasis regulator 167
25.4.2.2.1.1 Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.phytosiderophore biosynthesis.nicotianamine synthase 48
25.4.2.2.2 Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.ferric cation-chelator transporter (YSL) 32
25.4.2.2.3 Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.iron-mobilizing coumarin biosynthesis 4
25.4.2.2.3.1 Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.iron-mobilizing coumarin biosynthesis.feruloyl-CoA 6-hydroxylase 46
25.4.2.2.3.2 Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.iron-mobilizing coumarin biosynthesis.scopoletin 8-hydroxylase 30
25.4.2.3.3 Nutrient uptake.metal homeostasis.iron.non-vascular plant-specific uptake.iron-uptake facilitator (FEA) 2
25.4.2.4.1 Nutrient uptake.metal homeostasis.iron.iron storage.non-haem ferritin 16
25.4.2.4.2 Nutrient uptake.metal homeostasis.iron.iron storage.iron transporter (PIC) 2
25.4.2.4.3 Nutrient uptake.metal homeostasis.iron.iron storage.iron transporter (VIT) 44
25.4.2.5.1 Nutrient uptake.metal homeostasis.iron.long-distance iron transport.ferric-citrate complex transporter (FRD) 32
25.4.2.5.2 Nutrient uptake.metal homeostasis.iron.long-distance iron transport.ferric cation chelator protein (FPN) 28
25.4.3 Nutrient uptake.metal homeostasis.copper 2
25.4.3.1.1 Nutrient uptake.metal homeostasis.copper.regulation.copper homeostasis regulator (SPL7) 8
25.4.3.1.2 Nutrient uptake.metal homeostasis.copper.regulation.copper homeostasis co-regulator (KIN17) 14
25.4.3.2.1 Nutrient uptake.metal homeostasis.copper.uptake transport.copper transporter (COPT) 100

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001