Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.metal homeostasis.copper.uptake transport.copper transporter (COPT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 1 CH_aar_238 2 2 0.000547395
Acer truncatum chr3 1 CH_acertr_52 4 4 0.000000000132449
Aquilegia oxysepala CHR01 1 CH_aox_71 3 3 0.0000000964818
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 1 CH_arhy_225 3 4 0.000000107553
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 1 CH_arhy_226 3 4 0.000000107553
Arabidopsis thaliana Chr5 1 CH_ath_373 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00165 1 CH_atr_254 2 2 0.000238322
Brassica carinata ChrC03 1 CH_bca_359 3 3 0.00000121391
Brassica carinata ChrB08 1 CH_bca_360 3 3 0.00000121391
Brassica napus C02 1 CH_bna_274 3 3 0.00000104487
Brassica napus C09 1 CH_bna_439 3 7 0.0000365479
Brassica oleracea C2 1 CH_bol_120 3 3 0.000000352573
Camellia sinensis var. sinensis Chr11 1 CH_camsi_357 3 5 0.00000110372
Corylus avellana 6 1 CH_cav_89 3 3 0.0000000352706
Chara braunii BFEA01000158 1 CH_cbr_29 3 7 0.000000271579
Coffea canephora chr1 1 CH_ccan_342 2 5 0.000638821
Coffea canephora chr6 1 CH_ccan_62 3 5 0.00000000544142
Citrus clementina scaffold_8 1 CH_ccl_38 6 9 0.00000000000000324259
Carpinus fangiana Cfa04 1 CH_cfa_387 2 2 0.000757346
Cardamine hirsuta NSCAFA.214I 1 CH_chi_421 2 2 0.000691204
Carya illinoinensis Chr09 1 CH_cil_265 3 3 0.00000164821
Cucumis melo chr12 1 CH_cme_108 3 4 0.000000534005
Corchorus olitorius AWUE01016544.1 1 CH_col_31 3 3 0.00000128001
Carica papaya supercontig_56 1 CH_cpa_307 2 2 0.000285198
Chenopodium quinoa C_Quinoa_Scaffold_2465 1 CH_cqu_241 3 6 0.00000235671
Capsella rubella scaffold_8 1 CH_cru_416 2 2 0.000731154
Cucumis sativus L. chr1 1 CH_csa_192 3 14 0.0000759828
Daucus carota DCARv2_Chr3 1 CH_dca_469 2 2 0.000956663
Daucus carota DCARv2_Chr2 1 CH_dca_470 2 2 0.000956663
Erigeron canadensis Conyza_canadensis_scaffold:9 1 CH_eca_480 2 2 0.000673083
Eucalyptus grandis Chr10 1 CH_egr_152 6 8 0.00000000000000216495
Eutrema salsugineum scaffold_2 1 CH_esa_323 2 2 0.000761499
Fragaria vesca Fvb6 1 CH_fve_398 2 2 0.000353461
Gossypium raimondii Chr03 1 CH_gra_279 3 12 0.000156235
Lupinus albus Lalb_Chr19 1 CH_lal_363 2 2 0.000524824
Malus domestica Chr12 1 CH_mdo_238 3 3 0.000000474554
Punica granatum NC_045132.1 1 CH_pgr_123 3 3 0.000000295604
Phaseolus vulgaris Chr11 1 CH_pvu_462 2 2 0.000734727
Quercus lobata 1 1 CH_qlo_211 4 4 0.0000000000144511
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_282 3 4 0.0000001907
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_759 2 2 0.000597979
Salvia bowleyana GWHASIU00000007 1 CH_sbo_162 3 4 0.000000248395
Simmondsia chinensis GWHAASQ00000012 1 CH_sci_253 2 2 0.000510856
Sechium edule LG01 1 CH_sed_92 3 3 0.000000267217
Selaginella moellendorffii scaffold_21 1 CH_smo_46 3 4 0.00000292876
Trochodendron aralioides group7 1 CH_tar_139 3 3 0.000000189236
Theobroma cacao Chromosome_9 1 CH_tca_170 3 3 0.000000281615
Tripterygium wilfordii NC_052233.1 1 CH_twi_29 5 7 0.0000000000019577
Vitis vinifera chr6 1 CH_vvi_196 3 4 0.00000121483
Aethionema arabicum LG-1 2 CH_aar_238 2 2 0.000547395
Acer truncatum chr3 2 CH_acertr_52 4 4 0.000000000132449
Aquilegia oxysepala CHR01 2 CH_aox_71 3 3 0.0000000964818
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 2 CH_arhy_225 3 4 0.000000107553
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 2 CH_arhy_226 3 4 0.000000107553
Arabidopsis thaliana Chr5 2 CH_ath_373 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00165 2 CH_atr_254 2 2 0.000238322
Brassica carinata ChrC03 2 CH_bca_359 3 3 0.00000121391
Brassica carinata ChrB08 2 CH_bca_360 3 3 0.00000121391
Brassica oleracea C2 2 CH_bol_120 3 3 0.000000352573
Camellia sinensis var. sinensis Chr11 2 CH_camsi_357 3 5 0.00000110372
Corylus avellana 6 2 CH_cav_89 3 3 0.0000000352706
Chara braunii BFEA01000158 2 CH_cbr_29 3 7 0.000000271579
Coffea canephora chr1 2 CH_ccan_342 2 5 0.000638821
Coffea canephora chr6 2 CH_ccan_62 3 5 0.00000000544142
Citrus clementina scaffold_8 2 CH_ccl_38 6 9 0.00000000000000324259
Carpinus fangiana Cfa04 2 CH_cfa_387 2 2 0.000757346
Cardamine hirsuta NSCAFA.214I 2 CH_chi_421 2 2 0.000691204
Carya illinoinensis Chr09 2 CH_cil_265 3 3 0.00000164821
Cucumis melo chr12 2 CH_cme_108 3 4 0.000000534005
Corchorus olitorius AWUE01016544.1 2 CH_col_31 3 3 0.00000128001
Carica papaya supercontig_56 2 CH_cpa_307 2 2 0.000285198
Chenopodium quinoa C_Quinoa_Scaffold_2465 2 CH_cqu_241 3 6 0.00000235671
Capsella rubella scaffold_8 2 CH_cru_416 2 2 0.000731154
Cucumis sativus L. chr1 2 CH_csa_192 3 14 0.0000759828
Daucus carota DCARv2_Chr3 2 CH_dca_469 2 2 0.000956663
Daucus carota DCARv2_Chr2 2 CH_dca_470 2 2 0.000956663
Erigeron canadensis Conyza_canadensis_scaffold:9 2 CH_eca_480 2 2 0.000673083
Eucalyptus grandis Chr10 2 CH_egr_152 6 8 0.00000000000000216495
Eucalyptus grandis Chr01 2 CH_egr_621 3 5 0.0000233658
Eutrema salsugineum scaffold_2 2 CH_esa_323 2 2 0.000761499
Fragaria vesca Fvb6 2 CH_fve_398 2 2 0.000353461
Gossypium hirsutum A03 2 CH_ghi_632 3 11 0.000271311
Gossypium hirsutum D03 2 CH_ghi_633 3 11 0.000271311
Gossypium raimondii Chr03 2 CH_gra_279 3 12 0.000156235
Lupinus albus Lalb_Chr19 2 CH_lal_363 2 2 0.000524824
Lotus japonicus chr1 2 CH_lja_410 2 2 0.000715077
Malus domestica Chr12 2 CH_mdo_238 3 3 0.000000474554
Punica granatum NC_045132.1 2 CH_pgr_123 3 3 0.000000295604
Phaseolus vulgaris Chr11 2 CH_pvu_462 2 2 0.000734727
Quercus lobata 1 2 CH_qlo_211 4 4 0.0000000000144511
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_282 3 4 0.0000001907
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_759 2 2 0.000597979
Salvia bowleyana GWHASIU00000007 2 CH_sbo_162 3 4 0.000000248395
Simmondsia chinensis GWHAASQ00000012 2 CH_sci_253 2 2 0.000510856
Sechium edule LG01 2 CH_sed_92 3 3 0.000000267217
Selaginella moellendorffii scaffold_21 2 CH_smo_46 3 4 0.00000292876
Trochodendron aralioides group7 2 CH_tar_139 3 3 0.000000189236
Theobroma cacao Chromosome_9 2 CH_tca_170 3 3 0.000000281615
Tripterygium wilfordii NC_052233.1 2 CH_twi_29 5 7 0.0000000000019577
Vitis vinifera chr6 2 CH_vvi_196 3 4 0.00000121483

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001