Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.metal homeostasis.iron

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 1 CH_acertr_249 4 9 0.0000640672
Oryza sativa ssp. japonica chr02 1 CH_osa_337 3 4 0.000391641
Populus trichocarpa Chr16 1 CH_ptr_410 5 36 0.000313613
Acer truncatum chr5 2 CH_acertr_249 4 9 0.0000640672
Oryza sativa ssp. japonica chr02 2 CH_osa_337 3 4 0.000391641
Populus trichocarpa Chr16 2 CH_ptr_410 5 36 0.000313613

Available child term results

Ontology identifier Description Number of clusters
25.4.2.1.1 Nutrient uptake.metal homeostasis.iron.regulation.iron-binding sensor (HRZ/BRUTUS) 8
25.4.2.1.2 Nutrient uptake.metal homeostasis.iron.regulation.signal transduction factor (PRI1) 2
25.4.2.1.3 Nutrient uptake.metal homeostasis.iron.regulation.IRT1-ubiquitin ligase (IDF1) 7
25.4.2.1.5 Nutrient uptake.metal homeostasis.iron.regulation.iron uptake regulator (FIT) 12
25.4.2.1.6 Nutrient uptake.metal homeostasis.iron.regulation.bHLH-Ib-class iron/copper homeostasis regulator 98
25.4.2.1.7 Nutrient uptake.metal homeostasis.iron.regulation.bHLH-IVa-class iron homeostasis regulator 167
25.4.2.2.1.1 Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.phytosiderophore biosynthesis.nicotianamine synthase 48
25.4.2.2.2 Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.ferric cation-chelator transporter (YSL) 32
25.4.2.2.3 Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.iron-mobilizing coumarin biosynthesis 4
25.4.2.2.3.1 Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.iron-mobilizing coumarin biosynthesis.feruloyl-CoA 6-hydroxylase 46
25.4.2.2.3.2 Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.iron-mobilizing coumarin biosynthesis.scopoletin 8-hydroxylase 30
25.4.2.3.3 Nutrient uptake.metal homeostasis.iron.non-vascular plant-specific uptake.iron-uptake facilitator (FEA) 2
25.4.2.4.1 Nutrient uptake.metal homeostasis.iron.iron storage.non-haem ferritin 16
25.4.2.4.2 Nutrient uptake.metal homeostasis.iron.iron storage.iron transporter (PIC) 2
25.4.2.4.3 Nutrient uptake.metal homeostasis.iron.iron storage.iron transporter (VIT) 44
25.4.2.5.1 Nutrient uptake.metal homeostasis.iron.long-distance iron transport.ferric-citrate complex transporter (FRD) 32
25.4.2.5.2 Nutrient uptake.metal homeostasis.iron.long-distance iron transport.ferric cation chelator protein (FPN) 28

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001