Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.phosphorus assimilation.phosphate signalling.regulatory protein (SPX)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00106 1 CH_atr_306 2 2 0.000476644
Brassica carinata ChrC04 1 CH_bca_1101 2 2 0.000769551
Brassica carinata ChrB01 1 CH_bca_1102 2 2 0.000769551
Corylus avellana 1 1 CH_cav_428 2 2 0.000460017
Fragaria vesca Fvb7 1 CH_fve_458 2 2 0.000589102
Quercus lobata CM012294 1 CH_qlo_1020 2 2 0.000774433
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_733 2 2 0.000398653
Amborella trichopoda AmTr_v1.0_scaffold00106 2 CH_atr_306 2 2 0.000476644
Brassica carinata ChrC04 2 CH_bca_1101 2 2 0.000769551
Brassica carinata ChrB01 2 CH_bca_1102 2 2 0.000769551
Corylus avellana 1 2 CH_cav_428 2 2 0.000460017
Fragaria vesca Fvb7 2 CH_fve_458 2 2 0.000589102
Quercus lobata CM012294 2 CH_qlo_1020 2 2 0.000774433
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_733 2 2 0.000398653

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001