Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.metal homeostasis.reduction-based strategy uptake.iron/zinc/manganese/cobalt cation uptake transporter (IRT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-6 1 CH_aar_163 2 2 0.0000912326
Arabidopsis lyrata scaffold_8 1 CH_aly_375 2 2 0.000396027
Arabidopsis lyrata scaffold_7 1 CH_aly_376 2 2 0.000396027
Arabidopsis thaliana Chr4 1 CH_ath_262 2 3 0.0000859463
Brassica carinata ChrC06 1 CH_bca_279 3 3 0.000000249498
Brassica carinata Contig606 1 CH_bca_90 4 5 0.000000000146657
Brassica napus C07 1 CH_bna_209 3 3 0.000000147645
Brassica oleracea C7 1 CH_bol_113 3 4 0.00000022435
Brassica rapa A01 1 CH_bra_328 2 2 0.000429314
Cardamine hirsuta Chr7 1 CH_chi_309 2 2 0.000207361
Capsella rubella scaffold_8 1 CH_cru_381 2 2 0.000438693
Capsella rubella scaffold_7 1 CH_cru_382 2 2 0.000438693
Eutrema salsugineum scaffold_1 1 CH_esa_285 2 2 0.000456899
Aethionema arabicum LG-6 2 CH_aar_163 2 2 0.0000912326
Arabidopsis lyrata scaffold_8 2 CH_aly_375 2 2 0.000396027
Arabidopsis lyrata scaffold_7 2 CH_aly_376 2 2 0.000396027
Arabidopsis thaliana Chr4 2 CH_ath_262 2 3 0.0000859463
Brassica carinata ChrC06 2 CH_bca_279 3 3 0.000000249498
Brassica carinata Contig606 2 CH_bca_90 4 5 0.000000000146657
Brassica oleracea C7 2 CH_bol_113 3 4 0.00000022435
Brassica rapa A01 2 CH_bra_328 2 2 0.000429314
Cardamine hirsuta Chr7 2 CH_chi_309 2 2 0.000207361
Capsella rubella scaffold_8 2 CH_cru_381 2 2 0.000438693
Capsella rubella scaffold_7 2 CH_cru_382 2 2 0.000438693
Eutrema salsugineum scaffold_1 2 CH_esa_285 2 2 0.000456899

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001