Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.nitrogen assimilation.nitrate uptake system.nitrate transceptor (NRT1.1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 1 CH_amhyb_244 2 2 0.000505051
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 1 CH_amhyb_245 2 2 0.000505051
Beta vulgaris Chr5_EL10_PGA_scaffold2 1 CH_bvu_192 2 2 0.0000827917
Cannabis sativa NC_044374.1 1 CH_cansat_281 2 3 0.000196986
Chenopodium quinoa C_Quinoa_Scaffold_1971 1 CH_cqu_446 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_3651 1 CH_cqu_447 2 2 0.000284293
Daucus carota DCARv2_Chr2 1 CH_dca_374 2 2 0.000382665
Gossypium raimondii Chr03 1 CH_gra_366 2 2 0.000321664
Manihot esculenta Chromosome01 1 CH_mes_375 2 2 0.000183189
Petunia axillaris Peaxi162Scf00102 1 CH_pax_264 2 2 0.000211067
Punica granatum NC_045127.1 1 CH_pgr_351 2 3 0.000675279
Papaver somniferum NC_039360.1 1 CH_pso_186 3 3 0.0000000152191
Papaver somniferum NC_039362.1 1 CH_pso_220 3 4 0.0000000608743
Rhododendron simsii chr07 1 CH_rsi_363 2 2 0.0000645307
Simmondsia chinensis GWHAASQ00000001 1 CH_sci_171 2 2 0.0000851426
Selenicereus undatus Scaffold_10417 1 CH_sun_142 2 2 0.0000726639
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 2 CH_amhyb_244 2 2 0.000505051
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 2 CH_amhyb_245 2 2 0.000505051
Beta vulgaris Chr5_EL10_PGA_scaffold2 2 CH_bvu_192 2 2 0.0000827917
Cannabis sativa NC_044374.1 2 CH_cansat_281 2 3 0.000196986
Chenopodium quinoa C_Quinoa_Scaffold_1971 2 CH_cqu_446 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_3651 2 CH_cqu_447 2 2 0.000284293
Daucus carota DCARv2_Chr2 2 CH_dca_374 2 2 0.000382665
Gossypium hirsutum D03 2 CH_ghi_789 2 2 0.000560733
Gossypium raimondii Chr03 2 CH_gra_366 2 2 0.000321664
Lotus japonicus chr2 2 CH_lja_376 2 2 0.000429046
Manihot esculenta Chromosome01 2 CH_mes_375 2 2 0.000183189
Petunia axillaris Peaxi162Scf00102 2 CH_pax_264 2 2 0.000211067
Punica granatum NC_045127.1 2 CH_pgr_351 2 3 0.000675279
Papaver somniferum NC_039360.1 2 CH_pso_186 3 3 0.0000000152191
Papaver somniferum NC_039362.1 2 CH_pso_220 3 4 0.0000000608743
Rhododendron simsii chr07 2 CH_rsi_363 2 2 0.0000645307
Simmondsia chinensis GWHAASQ00000001 2 CH_sci_171 2 2 0.0000851426
Selenicereus undatus Scaffold_10417 2 CH_sun_142 2 2 0.0000726639

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001