Functional clusters
Information
- Type MapMan
- Description Nutrient uptake.metal homeostasis.reduction-based strategy uptake.metal ion-chelate reductase (FRO)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | ctg97_1 | 1 | CH_acertr_530 | 2 | 3 | 0.000634436 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_7 | 1 | CH_amhyb_271 | 2 | 2 | 0.000841751 |
| Aquilegia oxysepala | CHR07 | 1 | CH_aox_81 | 3 | 3 | 0.000000337686 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 1 | CH_arhy_191 | 4 | 11 | 0.0000000131403 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_424 | 2 | 2 | 0.000802177 |
| Brassica carinata | ChrC07 | 1 | CH_bca_515 | 4 | 70 | 0.0000191009 |
| Brassica napus | A09 | 1 | CH_bna_231 | 3 | 3 | 0.000000351045 |
| Brassica oleracea | C8 | 1 | CH_bol_433 | 2 | 2 | 0.000915212 |
| Camellia sinensis var. sinensis | Chr3 | 1 | CH_camsi_379 | 3 | 6 | 0.00000220723 |
| Cannabis sativa | NC_044374.1 | 1 | CH_cansat_88 | 4 | 12 | 0.00000000630303 |
| Capsicum annuum | PGAv.1.6.scaffold78 | 1 | CH_can_220 | 3 | 6 | 0.0000171867 |
| Coffea canephora | chr2 | 1 | CH_ccan_329 | 2 | 9 | 0.000536609 |
| Citrus clementina | scaffold_9 | 1 | CH_ccl_492 | 2 | 3 | 0.000820311 |
| Carica papaya | supercontig_107 | 1 | CH_cpa_395 | 2 | 2 | 0.000950661 |
| Davidia involucrata | GWHABJS00000005 | 1 | CH_din_213 | 3 | 8 | 0.0000117592 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 1 | CH_eca_533 | 2 | 2 | 0.000942317 |
| Eucalyptus grandis | Chr09 | 1 | CH_egr_177 | 5 | 5 | 0.0000000000000406647 |
| Erythranthe guttata | scaffold_6 | 1 | CH_egut_98 | 4 | 4 | 0.000000000828192 |
| Erythranthe guttata | scaffold_2 | 1 | CH_egut_99 | 4 | 4 | 0.000000000828192 |
| Fragaria x ananassa | Fvb7-3 | 1 | CH_fan_262 | 3 | 4 | 0.00000534033 |
| Fragaria x ananassa | Fvb7-2 | 1 | CH_fan_371 | 3 | 8 | 0.0000747142 |
| Fragaria vesca | Fvb5 | 1 | CH_fve_478 | 2 | 2 | 0.000883652 |
| Lupinus albus | Lalb_Chr17 | 1 | CH_lal_3 | 10 | 11 | 2.3594e-31 |
| Magnolia biondii | Chr11 | 1 | CH_mbi_93 | 4 | 9 | 0.000000001515 |
| Marchantia polymorpha | scaffold_193 | 1 | CH_mpo_19 | 4 | 4 | 0.00000000289005 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_443 | 2 | 2 | 0.000654022 |
| Petunia axillaris | Peaxi162Scf00194 | 1 | CH_pax_126 | 3 | 3 | 0.00000122515 |
| Punica granatum | NC_045128.1 | 1 | CH_pgr_62 | 4 | 4 | 0.00000000026619 |
| Prunus persica | Pp02 | 1 | CH_ppe_513 | 2 | 2 | 0.000745962 |
| Quercus lobata | CM012294 | 1 | CH_qlo_269 | 4 | 4 | 0.000000000563593 |
| Quercus lobata | 9 | 1 | CH_qlo_270 | 4 | 4 | 0.000000000563593 |
| Quercus lobata | 4 | 1 | CH_qlo_519 | 3 | 3 | 0.00000181928 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 1 | CH_rch_319 | 3 | 3 | 0.000000524459 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_368 | 3 | 4 | 0.00000209751 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 1 | CH_rch_92 | 5 | 7 | 0.000000000000315005 |
| Salvia bowleyana | GWHASIU00000008 | 1 | CH_sbo_155 | 3 | 3 | 0.000000173889 |
| Simmondsia chinensis | GWHAASQ00000013 | 1 | CH_sci_36 | 4 | 8 | 0.00000000453453 |
| Sechium edule | LG13 | 1 | CH_sed_86 | 3 | 3 | 0.000000152696 |
| Solanum lycopersicum | SL4.0ch01 | 1 | CH_sly_179 | 3 | 3 | 0.000000289388 |
| Solanum pennellii | Spenn-ch01 | 1 | CH_spe_139 | 3 | 3 | 0.0000000593529 |
| Theobroma cacao | Chromosome_3 | 1 | CH_tca_444 | 2 | 2 | 0.000732386 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 1 | CH_tpr_101 | 3 | 3 | 0.000000171909 |
| Tripterygium wilfordii | NC_052248.1 | 1 | CH_twi_255 | 2 | 2 | 0.000334504 |
| Acer truncatum | ctg97_1 | 2 | CH_acertr_530 | 2 | 3 | 0.000634436 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_7 | 2 | CH_amhyb_271 | 2 | 2 | 0.000841751 |
| Aquilegia oxysepala | CHR07 | 2 | CH_aox_81 | 3 | 3 | 0.000000337686 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 2 | CH_arhy_191 | 4 | 11 | 0.0000000131403 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_424 | 2 | 2 | 0.000802177 |
| Brassica carinata | ChrC07 | 2 | CH_bca_515 | 4 | 70 | 0.0000191009 |
| Brassica oleracea | C8 | 2 | CH_bol_433 | 2 | 2 | 0.000915212 |
| Camellia sinensis var. sinensis | Chr3 | 2 | CH_camsi_379 | 3 | 6 | 0.00000220723 |
| Cannabis sativa | NC_044374.1 | 2 | CH_cansat_88 | 4 | 12 | 0.00000000630303 |
| Capsicum annuum | PGAv.1.6.scaffold78 | 2 | CH_can_220 | 3 | 6 | 0.0000171867 |
| Coffea canephora | chr2 | 2 | CH_ccan_329 | 2 | 9 | 0.000536609 |
| Citrus clementina | scaffold_9 | 2 | CH_ccl_492 | 2 | 3 | 0.000820311 |
| Carica papaya | supercontig_107 | 2 | CH_cpa_395 | 2 | 2 | 0.000950661 |
| Davidia involucrata | GWHABJS00000005 | 2 | CH_din_213 | 3 | 8 | 0.0000117592 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 2 | CH_eca_533 | 2 | 2 | 0.000942317 |
| Eucalyptus grandis | Chr09 | 2 | CH_egr_177 | 5 | 5 | 0.0000000000000406647 |
| Erythranthe guttata | scaffold_6 | 2 | CH_egut_98 | 4 | 4 | 0.000000000828192 |
| Erythranthe guttata | scaffold_2 | 2 | CH_egut_99 | 4 | 4 | 0.000000000828192 |
| Fragaria x ananassa | Fvb7-3 | 2 | CH_fan_262 | 3 | 4 | 0.00000534033 |
| Fragaria x ananassa | Fvb7-2 | 2 | CH_fan_371 | 3 | 8 | 0.0000747142 |
| Fragaria vesca | Fvb5 | 2 | CH_fve_478 | 2 | 2 | 0.000883652 |
| Lupinus albus | Lalb_Chr17 | 2 | CH_lal_3 | 10 | 11 | 2.3594e-31 |
| Magnolia biondii | Chr11 | 2 | CH_mbi_93 | 4 | 9 | 0.000000001515 |
| Marchantia polymorpha | scaffold_193 | 2 | CH_mpo_19 | 4 | 4 | 0.00000000289005 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_443 | 2 | 2 | 0.000654022 |
| Petunia axillaris | Peaxi162Scf00194 | 2 | CH_pax_126 | 3 | 3 | 0.00000122515 |
| Punica granatum | NC_045128.1 | 2 | CH_pgr_62 | 4 | 4 | 0.00000000026619 |
| Prunus persica | Pp02 | 2 | CH_ppe_513 | 2 | 2 | 0.000745962 |
| Quercus lobata | CM012294 | 2 | CH_qlo_269 | 4 | 4 | 0.000000000563593 |
| Quercus lobata | 9 | 2 | CH_qlo_270 | 4 | 4 | 0.000000000563593 |
| Quercus lobata | 4 | 2 | CH_qlo_519 | 3 | 3 | 0.00000181928 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 2 | CH_rch_319 | 3 | 3 | 0.000000524459 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_368 | 3 | 4 | 0.00000209751 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 2 | CH_rch_92 | 5 | 7 | 0.000000000000315005 |
| Salvia bowleyana | GWHASIU00000008 | 2 | CH_sbo_155 | 3 | 3 | 0.000000173889 |
| Simmondsia chinensis | GWHAASQ00000013 | 2 | CH_sci_36 | 4 | 8 | 0.00000000453453 |
| Sechium edule | LG13 | 2 | CH_sed_86 | 3 | 3 | 0.000000152696 |
| Solanum lycopersicum | SL4.0ch01 | 2 | CH_sly_179 | 3 | 3 | 0.000000289388 |
| Solanum pennellii | Spenn-ch01 | 2 | CH_spe_139 | 3 | 3 | 0.0000000593529 |
| Theobroma cacao | Chromosome_3 | 2 | CH_tca_444 | 2 | 2 | 0.000732386 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 2 | CH_tpr_101 | 3 | 3 | 0.000000171909 |
| Tripterygium wilfordii | NC_052248.1 | 2 | CH_twi_255 | 2 | 2 | 0.000334504 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |