Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.metal homeostasis.iron.regulation.bHLH-IVa-class iron homeostasis regulator

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-6 1 CH_aar_77 3 3 0.000000436997
Acer truncatum chr3 1 CH_acertr_7 7 8 6.1895e-22
Actinidia chinensis Lachesis_group4 1 CH_ach_237 2 2 0.000543213
Arabidopsis lyrata scaffold_4 1 CH_aly_92 3 3 0.0000000261404
Avicennia marina ScioBoG_3895_HRSCAF_3912 1 CH_ama_12 4 5 0.00000000121137
Avicennia marina ScioBoG_102836_HRSCAF_103072 1 CH_ama_31 3 3 0.000000936749
Aquilegia oxysepala CHR06 1 CH_aox_158 2 2 0.0000801989
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 1 CH_arhy_341 3 3 0.0000044045
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 1 CH_arhy_342 3 3 0.0000044045
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 1 CH_arhy_343 3 3 0.0000044045
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 1 CH_arhy_427 3 5 0.000044019
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 1 CH_arhy_541 3 8 0.000246288
Arabidopsis thaliana Chr2 1 CH_ath_160 3 8 0.000000689338
Brassica carinata ChrC07 1 CH_bca_469 3 5 0.00000911346
Brassica carinata ChrB06 1 CH_bca_470 3 5 0.00000911346
Brassica carinata ChrC02 1 CH_bca_510 3 6 0.0000182241
Brassica carinata ChrB08 1 CH_bca_583 3 8 0.0000510116
Brassica napus C04 1 CH_bna_321 3 4 0.0000031796
Brassica napus A04 1 CH_bna_353 3 5 0.00000794788
Brassica napus A09 1 CH_bna_354 3 5 0.00000794788
Brassica napus C08 1 CH_bna_396 3 6 0.0000158935
Brassica oleracea C8 1 CH_bol_158 3 6 0.00000269165
Brassica rapa A04 1 CH_bra_138 3 5 0.00000331676
Beta vulgaris Chr6_EL10_PGA_scaffold0 1 CH_bvu_57 4 5 0.00000000107247
Cannabis sativa NC_044373.1 1 CH_cansat_117 3 4 0.00000010348
Capsicum annuum PGAv.1.6.scaffold1061 1 CH_can_128 3 3 0.000000102372
Cicer arietinum L. Ca_LG7_v3 1 CH_car_79 3 3 0.0000014993
Cicer arietinum L. Ca_LG8_v3 1 CH_car_80 3 3 0.0000014993
Coffea canephora chr2 1 CH_ccan_214 3 47 0.0000727453
Citrus clementina scaffold_7 1 CH_ccl_450 2 2 0.000492187
Carpinus fangiana Cfa02 1 CH_cfa_231 2 2 0.0000757346
Cardamine hirsuta Chr4 1 CH_chi_116 3 3 0.000000071667
Carya illinoinensis Chr08 1 CH_cil_554 2 2 0.000929742
Citrullus lanatus CG_Chr01 1 CH_cla_38 3 3 0.0000000472204
Cucumis melo chr08 1 CH_cme_80 3 3 0.0000000267031
Chenopodium quinoa C_Quinoa_Scaffold_1214 1 CH_cqu_260 3 4 0.00000612773
Capsella rubella scaffold_4 1 CH_cru_128 3 3 0.000000080191
Cucumis sativus L. chr6 1 CH_csa_95 3 3 0.0000000418111
Daucus carota DCARv2_Chr3 1 CH_dca_52 4 5 0.000000000136194
Davidia involucrata GWHABJS00000014 1 CH_din_468 2 2 0.000500125
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_522 2 2 0.000942317
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_523 2 2 0.000942317
Eucalyptus grandis Chr08 1 CH_egr_59 8 11 5.50409e-24
Eutrema salsugineum scaffold_15 1 CH_esa_78 3 3 0.0000000869853
Fragaria vesca Fvb1 1 CH_fve_429 2 3 0.000530165
Glycine max Gm13 1 CH_gma_285 3 3 0.0000129314
Glycine max Gm17 1 CH_gma_286 3 3 0.0000129314
Glycine max Gm01 1 CH_gma_287 3 3 0.0000129314
Glycine max Gm05 1 CH_gma_288 3 3 0.0000129314
Glycine max Gm07 1 CH_gma_289 3 3 0.0000129314
Glycine max Gm08 1 CH_gma_290 3 3 0.0000129314
Helianthus annuus HanXRQChr11 1 CH_han_167 4 5 0.00000000118134
Lotus japonicus chr2 1 CH_lja_51 5 7 0.0000000000179785
Lonicera japonica GWHAAZE00000004 1 CH_lonja_68 5 6 0.0000000000000324172
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_244 3 4 0.000001902
Magnolia biondii Chr16 1 CH_mbi_458 2 2 0.000145698
Manihot esculenta Chromosome13 1 CH_mes_460 2 2 0.000610631
Medicago truncatula chr4 1 CH_mtr_193 4 4 0.00000000221111
Medicago truncatula chr5 1 CH_mtr_255 4 6 0.0000000331434
Nicotiana tabacum Nitab4.5_0000093 1 CH_nta_29 4 8 0.0000000194059
Nicotiana tabacum Nitab4.5_0000396 1 CH_nta_30 4 9 0.0000000349225
Petunia axillaris Peaxi162Scf00216 1 CH_pax_28 5 6 0.00000000000331065
Petunia axillaris Peaxi162Scf00818 1 CH_pax_57 4 5 0.00000000712881
Punica granatum NC_045129.1 1 CH_pgr_105 3 3 0.0000000844584
Prunus persica Pp06 1 CH_ppe_409 2 2 0.000223789
Pisum sativum chr4LG4 1 CH_psa_29 5 6 0.000000000000428784
Phaseolus vulgaris Chr10 1 CH_pvu_159 4 8 0.000000322254
Phaseolus vulgaris Chr03 1 CH_pvu_219 3 3 0.00000784662
Phaseolus vulgaris Chr10 1 CH_pvu_96 4 4 0.00000000461244
Quercus lobata 6 1 CH_qlo_806 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_589 2 2 0.000119596
Salvia bowleyana GWHASIU00000002 1 CH_sbo_130 3 3 0.0000000310517
Sechium edule LG10 1 CH_sed_298 2 2 0.000428052
Solanum lycopersicum SL4.0ch02 1 CH_sly_154 3 3 0.000000103353
Solanum lycopersicum SL4.0ch06 1 CH_sly_547 2 2 0.000880411
Schrenkiella parvula ch4-1 1 CH_spa_96 3 3 0.000000185978
Solanum pennellii Spenn-ch02 1 CH_spe_125 3 3 0.0000000296764
Solanum tuberosum ST4.03ch02 1 CH_stu_139 3 3 0.0000000157569
Trochodendron aralioides group4 1 CH_tar_156 3 3 0.000000454168
Trochodendron aralioides group14 1 CH_tar_194 3 5 0.00000454018
Theobroma cacao Chromosome_1 1 CH_tca_348 2 2 0.000219716
Tarenaya hassleriana NW_010963495.1 1 CH_tha_55 3 3 0.000000146363
Vigna mungo CM024078.1 1 CH_vmu_123 3 3 0.00000137779
Vigna mungo CM024069.1 1 CH_vmu_139 3 4 0.00000550977
Vitis vinifera chr7 1 CH_vvi_204 3 4 0.00000194368
Zea mays 1 1 CH_zma_127 3 6 0.0000172453
Aethionema arabicum LG-6 2 CH_aar_77 3 3 0.000000436997
Acer truncatum chr3 2 CH_acertr_7 7 8 6.1895e-22
Actinidia chinensis Lachesis_group4 2 CH_ach_237 2 2 0.000543213
Arabidopsis lyrata scaffold_4 2 CH_aly_92 3 3 0.0000000261404
Avicennia marina ScioBoG_3895_HRSCAF_3912 2 CH_ama_12 4 5 0.00000000121137
Avicennia marina ScioBoG_102836_HRSCAF_103072 2 CH_ama_31 3 3 0.000000936749
Aquilegia oxysepala CHR06 2 CH_aox_158 2 2 0.0000801989
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 2 CH_arhy_341 3 3 0.0000044045
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 2 CH_arhy_342 3 3 0.0000044045
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 2 CH_arhy_343 3 3 0.0000044045
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 2 CH_arhy_427 3 5 0.000044019
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 2 CH_arhy_541 3 8 0.000246288
Arabidopsis thaliana Chr2 2 CH_ath_160 3 8 0.000000689338
Brassica carinata ChrC07 2 CH_bca_469 3 5 0.00000911346
Brassica carinata ChrB06 2 CH_bca_470 3 5 0.00000911346
Brassica carinata ChrC02 2 CH_bca_510 3 6 0.0000182241
Brassica carinata ChrB08 2 CH_bca_583 3 8 0.0000510116
Brassica oleracea C8 2 CH_bol_158 3 6 0.00000269165
Brassica rapa A04 2 CH_bra_138 3 5 0.00000331676
Beta vulgaris Chr6_EL10_PGA_scaffold0 2 CH_bvu_57 4 5 0.00000000107247
Cannabis sativa NC_044373.1 2 CH_cansat_117 3 4 0.00000010348
Capsicum annuum PGAv.1.6.scaffold1061 2 CH_can_128 3 3 0.000000102372
Cicer arietinum L. Ca_LG7_v3 2 CH_car_79 3 3 0.0000014993
Cicer arietinum L. Ca_LG8_v3 2 CH_car_80 3 3 0.0000014993
Coffea canephora chr2 2 CH_ccan_214 3 47 0.0000727453
Citrus clementina scaffold_7 2 CH_ccl_450 2 2 0.000492187
Carpinus fangiana Cfa02 2 CH_cfa_231 2 2 0.0000757346
Cardamine hirsuta Chr4 2 CH_chi_116 3 3 0.000000071667
Carya illinoinensis Chr08 2 CH_cil_554 2 2 0.000929742
Citrullus lanatus CG_Chr01 2 CH_cla_38 3 3 0.0000000472204
Cucumis melo chr08 2 CH_cme_80 3 3 0.0000000267031
Chenopodium quinoa C_Quinoa_Scaffold_1214 2 CH_cqu_260 3 4 0.00000612773
Capsella rubella scaffold_4 2 CH_cru_128 3 3 0.000000080191
Cucumis sativus L. chr6 2 CH_csa_95 3 3 0.0000000418111
Daucus carota DCARv2_Chr3 2 CH_dca_52 4 5 0.000000000136194
Davidia involucrata GWHABJS00000014 2 CH_din_468 2 2 0.000500125
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_522 2 2 0.000942317
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_523 2 2 0.000942317
Eucalyptus grandis Chr08 2 CH_egr_59 8 11 5.50409e-24
Eutrema salsugineum scaffold_15 2 CH_esa_78 3 3 0.0000000869853
Fragaria vesca Fvb1 2 CH_fve_429 2 3 0.000530165
Glycine max Gm13 2 CH_gma_285 3 3 0.0000129314
Glycine max Gm17 2 CH_gma_286 3 3 0.0000129314
Glycine max Gm01 2 CH_gma_287 3 3 0.0000129314
Glycine max Gm05 2 CH_gma_288 3 3 0.0000129314
Glycine max Gm07 2 CH_gma_289 3 3 0.0000129314
Glycine max Gm08 2 CH_gma_290 3 3 0.0000129314
Helianthus annuus HanXRQChr11 2 CH_han_167 4 5 0.00000000118134
Lotus japonicus chr3 2 CH_lja_200 3 3 0.00000429537
Lotus japonicus chr2 2 CH_lja_51 5 7 0.0000000000179785
Lonicera japonica GWHAAZE00000004 2 CH_lonja_68 5 6 0.0000000000000324172
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_244 3 4 0.000001902
Magnolia biondii Chr16 2 CH_mbi_458 2 2 0.000145698
Manihot esculenta Chromosome13 2 CH_mes_460 2 2 0.000610631
Nicotiana tabacum Nitab4.5_0000093 2 CH_nta_29 4 8 0.0000000194059
Nicotiana tabacum Nitab4.5_0000396 2 CH_nta_30 4 9 0.0000000349225
Petunia axillaris Peaxi162Scf00216 2 CH_pax_28 5 6 0.00000000000331065
Petunia axillaris Peaxi162Scf00818 2 CH_pax_57 4 5 0.00000000712881
Punica granatum NC_045129.1 2 CH_pgr_105 3 3 0.0000000844584
Prunus persica Pp06 2 CH_ppe_409 2 2 0.000223789
Pisum sativum chr4LG4 2 CH_psa_29 5 6 0.000000000000428784
Phaseolus vulgaris Chr10 2 CH_pvu_159 4 8 0.000000322254
Phaseolus vulgaris Chr03 2 CH_pvu_219 3 3 0.00000784662
Phaseolus vulgaris Chr10 2 CH_pvu_96 4 4 0.00000000461244
Quercus lobata 6 2 CH_qlo_806 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_589 2 2 0.000119596
Salvia bowleyana GWHASIU00000002 2 CH_sbo_130 3 3 0.0000000310517
Sechium edule LG10 2 CH_sed_298 2 2 0.000428052
Solanum lycopersicum SL4.0ch02 2 CH_sly_154 3 3 0.000000103353
Solanum lycopersicum SL4.0ch06 2 CH_sly_547 2 2 0.000880411
Schrenkiella parvula ch4-1 2 CH_spa_96 3 3 0.000000185978
Solanum pennellii Spenn-ch02 2 CH_spe_125 3 3 0.0000000296764
Solanum tuberosum ST4.03ch02 2 CH_stu_139 3 3 0.0000000157569
Trochodendron aralioides group4 2 CH_tar_156 3 3 0.000000454168
Trochodendron aralioides group14 2 CH_tar_194 3 5 0.00000454018
Theobroma cacao Chromosome_1 2 CH_tca_348 2 2 0.000219716
Tarenaya hassleriana NW_010963495.1 2 CH_tha_55 3 3 0.000000146363
Vigna mungo CM024078.1 2 CH_vmu_123 3 3 0.00000137779
Vigna mungo CM024069.1 2 CH_vmu_139 3 4 0.00000550977
Vitis vinifera chr7 2 CH_vvi_204 3 4 0.00000194368
Zea mays 1 2 CH_zma_127 3 6 0.0000172453

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001