Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.metal homeostasis.copper.regulation.copper homeostasis co-regulator (KIN17)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 1 CH_arhy_505 2 2 0.00017963
Amborella trichopoda AmTr_v1.0_scaffold00006 1 CH_atr_238 2 3 0.000238313
Cardamine hirsuta Chr7 1 CH_chi_301 2 2 0.000207361
Capsella rubella scaffold_1 1 CH_cru_310 2 3 0.000219338
Petunia axillaris Peaxi162Scf00015 1 CH_pax_308 2 2 0.000422134
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_662 2 2 0.000239192
Utricularia gibba unitig_26 1 CH_ugi_214 2 2 0.000220378
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 2 CH_arhy_505 2 2 0.00017963
Amborella trichopoda AmTr_v1.0_scaffold00006 2 CH_atr_238 2 3 0.000238313
Cardamine hirsuta Chr7 2 CH_chi_301 2 2 0.000207361
Capsella rubella scaffold_1 2 CH_cru_310 2 3 0.000219338
Petunia axillaris Peaxi162Scf00015 2 CH_pax_308 2 2 0.000422134
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_662 2 2 0.000239192
Utricularia gibba unitig_26 2 CH_ugi_214 2 2 0.000220378

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001