Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.metal homeostasis.iron.long-distance iron transport.ferric cation chelator protein (FPN)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_25048_HRSCAF_25167 1 CH_ama_53 2 2 0.0000862218
Brassica napus C04 1 CH_bna_540 2 2 0.000185515
Carya illinoinensis Chr09 1 CH_cil_399 2 3 0.000185943
Lotus japonicus chr3 1 CH_lja_86 3 3 0.00000000767031
Manihot esculenta Chromosome09 1 CH_mes_290 2 2 0.0000610631
Medicago truncatula chr4 1 CH_mtr_521 2 2 0.0000410863
Punica granatum NC_045127.1 1 CH_pgr_210 2 2 0.0000750356
Populus trichocarpa Chr16 1 CH_ptr_307 2 2 0.0000578001
Phaseolus vulgaris Chr10 1 CH_pvu_280 2 2 0.0000734727
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_590 2 2 0.000119596
Sechium edule LG14 1 CH_sed_201 2 2 0.0000713419
Theobroma cacao Chromosome_5 1 CH_tca_284 2 2 0.0000732386
Vigna mungo CM024078.1 1 CH_vmu_200 2 2 0.0000646141
Vitis vinifera chr8 1 CH_vvi_316 2 3 0.00022818
Zea mays 9 1 CH_zma_154 2 2 0.0000511313
Avicennia marina ScioBoG_25048_HRSCAF_25167 2 CH_ama_53 2 2 0.0000862218
Carya illinoinensis Chr09 2 CH_cil_399 2 3 0.000185943
Lotus japonicus chr3 2 CH_lja_86 3 3 0.00000000767031
Manihot esculenta Chromosome09 2 CH_mes_290 2 2 0.0000610631
Punica granatum NC_045127.1 2 CH_pgr_210 2 2 0.0000750356
Populus trichocarpa Chr16 2 CH_ptr_307 2 2 0.0000578001
Phaseolus vulgaris Chr10 2 CH_pvu_280 2 2 0.0000734727
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_590 2 2 0.000119596
Sechium edule LG14 2 CH_sed_201 2 2 0.0000713419
Theobroma cacao Chromosome_5 2 CH_tca_284 2 2 0.0000732386
Vigna mungo CM024078.1 2 CH_vmu_200 2 2 0.0000646141
Vitis vinifera chr8 2 CH_vvi_316 2 3 0.00022818
Zea mays 9 2 CH_zma_154 2 2 0.0000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001