Functional clusters
Information
- Type MapMan
- Description Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.ferric cation-chelator transporter (YSL)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 1 | CH_aag_136 | 2 | 2 | 0.00024077 |
| Carya illinoinensis | Chr11 | 1 | CH_cil_287 | 3 | 3 | 0.0000047026 |
| Lotus japonicus | chr2 | 1 | CH_lja_185 | 3 | 4 | 0.00000171786 |
| Nelumbo nucifera | chr4 | 1 | CH_nnu_436 | 2 | 2 | 0.000654022 |
| Oryza sativa ssp. japonica | chr04 | 1 | CH_osa_169 | 3 | 5 | 0.0000113765 |
| Quercus lobata | 9 | 1 | CH_qlo_366 | 4 | 7 | 0.0000000197108 |
| Quercus lobata | 8 | 1 | CH_qlo_486 | 4 | 15 | 0.000000767167 |
| Salvia bowleyana | GWHASIU00000003 | 1 | CH_sbo_200 | 3 | 3 | 0.00000173889 |
| Salix brachista | GWHAAZH00000012 | 1 | CH_sbr_126 | 5 | 47 | 0.000000538129 |
| Simmondsia chinensis | GWHAASQ00000020 | 1 | CH_sci_301 | 2 | 2 | 0.000851426 |
| Trochodendron aralioides | group12 | 1 | CH_tar_165 | 3 | 3 | 0.000000892115 |
| Tripterygium wilfordii | NC_052247.1 | 1 | CH_twi_107 | 3 | 3 | 0.000000559481 |
| Tripterygium wilfordii | NC_052247.1 | 1 | CH_twi_147 | 3 | 5 | 0.0000111838 |
| Vitis vinifera | chr1 | 1 | CH_vvi_194 | 3 | 3 | 0.00000104144 |
| Vitis vinifera | chr17 | 1 | CH_vvi_365 | 3 | 13 | 0.000297145 |
| Zea mays | 10 | 1 | CH_zma_114 | 3 | 3 | 0.00000521588 |
| Anthoceros agrestis | Sc2ySwM_228 | 2 | CH_aag_136 | 2 | 2 | 0.00024077 |
| Carya illinoinensis | Chr11 | 2 | CH_cil_287 | 3 | 3 | 0.0000047026 |
| Lotus japonicus | chr2 | 2 | CH_lja_185 | 3 | 4 | 0.00000171786 |
| Nelumbo nucifera | chr4 | 2 | CH_nnu_436 | 2 | 2 | 0.000654022 |
| Oryza sativa ssp. japonica | chr04 | 2 | CH_osa_169 | 3 | 5 | 0.0000113765 |
| Quercus lobata | 9 | 2 | CH_qlo_366 | 4 | 7 | 0.0000000197108 |
| Quercus lobata | 8 | 2 | CH_qlo_486 | 4 | 15 | 0.000000767167 |
| Salvia bowleyana | GWHASIU00000003 | 2 | CH_sbo_200 | 3 | 3 | 0.00000173889 |
| Salix brachista | GWHAAZH00000012 | 2 | CH_sbr_126 | 5 | 47 | 0.000000538129 |
| Simmondsia chinensis | GWHAASQ00000020 | 2 | CH_sci_301 | 2 | 2 | 0.000851426 |
| Trochodendron aralioides | group12 | 2 | CH_tar_165 | 3 | 3 | 0.000000892115 |
| Tripterygium wilfordii | NC_052247.1 | 2 | CH_twi_107 | 3 | 3 | 0.000000559481 |
| Tripterygium wilfordii | NC_052247.1 | 2 | CH_twi_147 | 3 | 5 | 0.0000111838 |
| Vitis vinifera | chr1 | 2 | CH_vvi_194 | 3 | 3 | 0.00000104144 |
| Vitis vinifera | chr17 | 2 | CH_vvi_365 | 3 | 13 | 0.000297145 |
| Zea mays | 10 | 2 | CH_zma_114 | 3 | 3 | 0.00000521588 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |