Functional clusters
Information
- Type MapMan
- Description Nutrient uptake.phosphorus assimilation
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 1 | CH_acertr_230 | 3 | 3 | 0.0000244226 |
| Brassica carinata | ChrB01 | 1 | CH_bca_159 | 5 | 6 | 0.00000000593726 |
| Cannabis sativa | NC_044379.1 | 1 | CH_cansat_190 | 3 | 3 | 0.0000290732 |
| Capsicum annuum | PGAv.1.6.scaffold206 | 1 | CH_can_101 | 4 | 4 | 0.0000000123736 |
| Citrullus lanatus | CG_Chr09 | 1 | CH_cla_148 | 3 | 4 | 0.000172387 |
| Cucumis melo | chr09 | 1 | CH_cme_210 | 3 | 4 | 0.0000780572 |
| Cucumis sativus L. | chr5 | 1 | CH_csa_235 | 3 | 4 | 0.00013686 |
| Davidia involucrata | GWHABJS00000014 | 1 | CH_din_133 | 4 | 5 | 0.000000154236 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 1 | CH_eca_215 | 4 | 11 | 0.00000657382 |
| Lonicera japonica | GWHAAZE00000004 | 1 | CH_lonja_210 | 4 | 5 | 0.000000212628 |
| Nicotiana tabacum | Nitab4.5_0001591 | 1 | CH_nta_81 | 3 | 3 | 0.0000415406 |
| Punica granatum | NC_045131.1 | 1 | CH_pgr_252 | 3 | 4 | 0.000167422 |
| Salix brachista | GWHAAZH00000017 | 1 | CH_sbr_109 | 4 | 4 | 0.000000159058 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_143 | 4 | 4 | 0.0000000317645 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_122 | 4 | 4 | 0.0000000138234 |
| Theobroma cacao | Chromosome_4 | 1 | CH_tca_258 | 3 | 3 | 0.0000399088 |
| Vitis vinifera | chr14 | 1 | CH_vvi_244 | 3 | 3 | 0.0000430463 |
| Acer truncatum | chr8 | 2 | CH_acertr_230 | 3 | 3 | 0.0000244226 |
| Brassica carinata | ChrB01 | 2 | CH_bca_159 | 5 | 6 | 0.00000000593726 |
| Cannabis sativa | NC_044379.1 | 2 | CH_cansat_190 | 3 | 3 | 0.0000290732 |
| Capsicum annuum | PGAv.1.6.scaffold206 | 2 | CH_can_101 | 4 | 4 | 0.0000000123736 |
| Citrullus lanatus | CG_Chr09 | 2 | CH_cla_148 | 3 | 4 | 0.000172387 |
| Cucumis melo | chr09 | 2 | CH_cme_210 | 3 | 4 | 0.0000780572 |
| Cucumis sativus L. | chr5 | 2 | CH_csa_235 | 3 | 4 | 0.00013686 |
| Davidia involucrata | GWHABJS00000014 | 2 | CH_din_133 | 4 | 5 | 0.000000154236 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 2 | CH_eca_215 | 4 | 11 | 0.00000657382 |
| Lonicera japonica | GWHAAZE00000004 | 2 | CH_lonja_210 | 4 | 5 | 0.000000212628 |
| Nicotiana tabacum | Nitab4.5_0001591 | 2 | CH_nta_81 | 3 | 3 | 0.0000415406 |
| Punica granatum | NC_045131.1 | 2 | CH_pgr_252 | 3 | 4 | 0.000167422 |
| Salix brachista | GWHAAZH00000017 | 2 | CH_sbr_109 | 4 | 4 | 0.000000159058 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_143 | 4 | 4 | 0.0000000317645 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_122 | 4 | 4 | 0.0000000138234 |
| Theobroma cacao | Chromosome_4 | 2 | CH_tca_258 | 3 | 3 | 0.0000399088 |
| Vitis vinifera | chr14 | 2 | CH_vvi_244 | 3 | 3 | 0.0000430463 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 25.3.1.2 | Nutrient uptake.phosphorus assimilation.phosphate signalling.regulatory protein (SPX) | 14 |
| 25.3.2 | Nutrient uptake.phosphorus assimilation.phosphate uptake | 6 |
| 25.3.2.3 | Nutrient uptake.phosphorus assimilation.phosphate uptake.phosphate transporter trafficking factor (PHF1) | 2 |
| 25.3.3.1 | Nutrient uptake.phosphorus assimilation.phosphate homeostasis.E2 ubiquitin-conjugating protein (PHO2) | 6 |
| 25.3.3.2 | Nutrient uptake.phosphorus assimilation.phosphate homeostasis.E3 ubiquitin ligase (NLA) | 28 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |