Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.phosphorus assimilation.phosphate homeostasis.E3 ubiquitin ligase (NLA)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 1 CH_aag_109 2 2 0.0000802568
Acer truncatum chr5 1 CH_acertr_438 2 2 0.000211491
Corylus avellana 2 1 CH_cav_41 4 5 0.0000000000338025
Citrus clementina scaffold_3 1 CH_ccl_455 2 2 0.000492187
Carpinus fangiana Cfa02 1 CH_cfa_43 4 4 0.00000000000651664
Carya illinoinensis Chr08 1 CH_cil_495 2 2 0.000371897
Davidia involucrata GWHABJS00000007 1 CH_din_362 2 2 0.000150038
Malus domestica Chr03 1 CH_mdo_100 4 5 0.0000000000572564
Punica granatum NC_045131.1 1 CH_pgr_331 2 2 0.000450214
Papaver somniferum NW_020631041.1 1 CH_pso_249 3 3 0.000000125558
Quercus lobata 7 1 CH_qlo_979 2 2 0.000516289
Salix brachista GWHAAZH00000014 1 CH_sbr_395 2 2 0.00063014
Schrenkiella parvula ch1-1 1 CH_spa_231 2 2 0.000236202
Selenicereus undatus Scaffold_33675 1 CH_sun_212 2 2 0.000217992
Anthoceros agrestis Sc2ySwM_344 2 CH_aag_109 2 2 0.0000802568
Acer truncatum chr5 2 CH_acertr_438 2 2 0.000211491
Corylus avellana 2 2 CH_cav_41 4 5 0.0000000000338025
Citrus clementina scaffold_3 2 CH_ccl_455 2 2 0.000492187
Carpinus fangiana Cfa02 2 CH_cfa_43 4 4 0.00000000000651664
Carya illinoinensis Chr08 2 CH_cil_495 2 2 0.000371897
Davidia involucrata GWHABJS00000007 2 CH_din_362 2 2 0.000150038
Malus domestica Chr03 2 CH_mdo_100 4 5 0.0000000000572564
Punica granatum NC_045131.1 2 CH_pgr_331 2 2 0.000450214
Papaver somniferum NW_020631041.1 2 CH_pso_249 3 3 0.000000125558
Quercus lobata 7 2 CH_qlo_979 2 2 0.000516289
Salix brachista GWHAAZH00000014 2 CH_sbr_395 2 2 0.00063014
Schrenkiella parvula ch1-1 2 CH_spa_231 2 2 0.000236202
Selenicereus undatus Scaffold_33675 2 CH_sun_212 2 2 0.000217992

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001