Functional clusters
Information
- Type MapMan
- Description Nutrient uptake.nitrogen assimilation
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Chlamydomonas reinhardtii | chromosome_9 | 1 | CH_cre_9 | 4 | 5 | 0.0000000157736 |
| Micromonas commoda | Chr_01 | 1 | CH_mco_1 | 7 | 9 | 1.35188e-16 |
| Prasinoderma coloniale | Chr5 | 1 | CH_pco_2 | 4 | 9 | 0.00000270163 |
| Prasinoderma coloniale | Chr8 | 1 | CH_pco_3 | 3 | 3 | 0.0000192869 |
| Chlamydomonas reinhardtii | chromosome_9 | 2 | CH_cre_9 | 4 | 5 | 0.0000000157736 |
| Micromonas commoda | Chr_01 | 2 | CH_mco_1 | 7 | 9 | 1.35188e-16 |
| Prasinoderma coloniale | Chr5 | 2 | CH_pco_2 | 4 | 9 | 0.00000270163 |
| Prasinoderma coloniale | Chr8 | 2 | CH_pco_3 | 3 | 3 | 0.0000192869 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 25.1.2 | Nutrient uptake.nitrogen assimilation.nitrate uptake system | 6 |
| 25.1.2.1 | Nutrient uptake.nitrogen assimilation.nitrate uptake system.nitrate transceptor (NRT1.1) | 34 |
| 25.1.2.2 | Nutrient uptake.nitrogen assimilation.nitrate uptake system.signalling factor (NRG2) | 4 |
| 25.1.2.3 | Nutrient uptake.nitrogen assimilation.nitrate uptake system.transcriptional repressor (NIGT) | 2 |
| 25.1.2.4.2 | Nutrient uptake.nitrogen assimilation.nitrate uptake system.nitrate-CPK-NLP signalling network.transcription factor (NLP6/7) | 8 |
| 25.1.2.6 | Nutrient uptake.nitrogen assimilation.nitrate uptake system.regulatory factor (NRT3) | 49 |
| 25.1.3.1 | Nutrient uptake.nitrogen assimilation.nitrate assimilation.nitrate reductase | 22 |
| 25.1.3.2 | Nutrient uptake.nitrogen assimilation.nitrate assimilation.nitrite reductase | 4 |
| 25.1.4.1.1 | Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamine synthetase activities.cytosolic glutamine synthetase (GLN1) | 12 |
| 25.1.5.1 | Nutrient uptake.nitrogen assimilation.glutamate deamination.glutamate dehydrogenase | 14 |
| 25.1.6 | Nutrient uptake.nitrogen assimilation.aspartate aminotransferase | 22 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |