Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.metal homeostasis.iron.long-distance iron transport.ferric-citrate complex transporter (FRD)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_1 1 CH_aly_310 2 2 0.000198013
Aquilegia oxysepala CHR01 1 CH_aox_159 2 2 0.0000801989
Brassica carinata ChrC01 1 CH_bca_1163 2 2 0.000961939
Brassica oleracea C3 1 CH_bol_438 2 3 0.000980536
Brassica rapa A03 1 CH_bra_266 2 2 0.000257588
Capsella rubella scaffold_1 1 CH_cru_322 2 2 0.000219346
Daucus carota DCARv2_Chr6 1 CH_dca_360 2 2 0.000382665
Helianthus annuus HanXRQChr01 1 CH_han_87 5 18 0.00000000000300744
Lupinus albus Lalb_Chr25 1 CH_lal_92 3 3 0.000000231376
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_396 2 2 0.000154202
Manihot esculenta Chromosome09 1 CH_mes_7 14 16 6.42622e-43
Medicago truncatula chr8 1 CH_mtr_372 3 8 0.00000141766
Nelumbo nucifera chr2 1 CH_nnu_458 2 3 0.000784787
Prunus persica Pp02 1 CH_ppe_458 2 2 0.000447577
Solanum tuberosum ST4.03ch01 1 CH_stu_514 2 2 0.000307472
Vitis vinifera chr13 1 CH_vvi_383 2 2 0.000456378
Arabidopsis lyrata scaffold_1 2 CH_aly_310 2 2 0.000198013
Aquilegia oxysepala CHR01 2 CH_aox_159 2 2 0.0000801989
Brassica carinata ChrC01 2 CH_bca_1163 2 2 0.000961939
Brassica oleracea C3 2 CH_bol_438 2 3 0.000980536
Brassica rapa A03 2 CH_bra_266 2 2 0.000257588
Capsella rubella scaffold_1 2 CH_cru_322 2 2 0.000219346
Daucus carota DCARv2_Chr6 2 CH_dca_360 2 2 0.000382665
Eucalyptus grandis Chr07 2 CH_egr_834 2 2 0.000351165
Helianthus annuus HanXRQChr01 2 CH_han_87 5 18 0.00000000000300744
Lupinus albus Lalb_Chr25 2 CH_lal_92 3 3 0.000000231376
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_396 2 2 0.000154202
Manihot esculenta Chromosome09 2 CH_mes_7 14 16 6.42622e-43
Nelumbo nucifera chr2 2 CH_nnu_458 2 3 0.000784787
Prunus persica Pp02 2 CH_ppe_458 2 2 0.000447577
Solanum tuberosum ST4.03ch01 2 CH_stu_514 2 2 0.000307472
Vitis vinifera chr13 2 CH_vvi_383 2 2 0.000456378

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001