Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.iron-mobilizing coumarin biosynthesis.feruloyl-CoA 6-hydroxylase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR01 1 CH_aox_320 2 3 0.000721742
Citrus clementina scaffold_2 1 CH_ccl_84 4 6 0.000000000372563
Daucus carota DCARv2_Chr6 1 CH_dca_115 3 3 0.000000122031
Daucus carota DCARv2_Chr8 1 CH_dca_195 3 10 0.0000146331
Durio zibethinus NW_019168481.1 1 CH_dzi_18 5 5 0.00000000000000436163
Gossypium hirsutum A08 1 CH_ghi_280 3 3 0.00000030587
Gossypium hirsutum D13 1 CH_ghi_281 3 3 0.00000030587
Gossypium raimondii Chr04 1 CH_gra_146 3 3 0.000000241431
Helianthus annuus HanXRQChr13 1 CH_han_323 3 8 0.00000250796
Helianthus annuus HanXRQChr11 1 CH_han_677 2 2 0.000579643
Lonicera japonica GWHAAZE00000001 1 CH_lonja_126 4 15 0.000000000879339
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_145 4 14 0.0000000142621
Manihot esculenta Chromosome07 1 CH_mes_182 3 3 0.000000313221
Manihot esculenta Chromosome10 1 CH_mes_91 4 4 0.0000000000478185
Nelumbo nucifera chr1 1 CH_nnu_99 3 7 0.0000000998007
Nicotiana tabacum Nitab4.5_0000254 1 CH_nta_177 2 3 0.000987456
Petunia axillaris Peaxi162Scf00062 1 CH_pax_342 2 2 0.000703556
Populus trichocarpa Chr01 1 CH_ptr_413 2 4 0.000346781
Quercus lobata 1 1 CH_qlo_50 7 10 6.44417e-21
Salix brachista GWHAAZH00000001 1 CH_sbr_38 4 5 0.00000000000375343
Trochodendron aralioides group7 1 CH_tar_124 3 4 0.0000000865036
Theobroma cacao Chromosome_9 1 CH_tca_336 2 2 0.000219716
Tripterygium wilfordii NC_052233.1 1 CH_twi_100 3 5 0.000000186475
Aquilegia oxysepala CHR01 2 CH_aox_320 2 3 0.000721742
Citrus clementina scaffold_2 2 CH_ccl_84 4 6 0.000000000372563
Daucus carota DCARv2_Chr6 2 CH_dca_115 3 3 0.000000122031
Daucus carota DCARv2_Chr8 2 CH_dca_195 3 10 0.0000146331
Durio zibethinus NW_019168481.1 2 CH_dzi_18 5 5 0.00000000000000436163
Gossypium hirsutum A08 2 CH_ghi_280 3 3 0.00000030587
Gossypium hirsutum D13 2 CH_ghi_281 3 3 0.00000030587
Gossypium raimondii Chr04 2 CH_gra_146 3 3 0.000000241431
Helianthus annuus HanXRQChr13 2 CH_han_323 3 8 0.00000250796
Helianthus annuus HanXRQChr11 2 CH_han_677 2 2 0.000579643
Lonicera japonica GWHAAZE00000001 2 CH_lonja_126 4 15 0.000000000879339
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_145 4 14 0.0000000142621
Manihot esculenta Chromosome07 2 CH_mes_182 3 3 0.000000313221
Manihot esculenta Chromosome10 2 CH_mes_91 4 4 0.0000000000478185
Nelumbo nucifera chr1 2 CH_nnu_99 3 7 0.0000000998007
Nicotiana tabacum Nitab4.5_0000254 2 CH_nta_177 2 3 0.000987456
Petunia axillaris Peaxi162Scf00062 2 CH_pax_342 2 2 0.000703556
Populus trichocarpa Chr01 2 CH_ptr_413 2 4 0.000346781
Quercus lobata 1 2 CH_qlo_50 7 10 6.44417e-21
Salix brachista GWHAAZH00000001 2 CH_sbr_38 4 5 0.00000000000375343
Trochodendron aralioides group7 2 CH_tar_124 3 4 0.0000000865036
Theobroma cacao Chromosome_9 2 CH_tca_336 2 2 0.000219716
Tripterygium wilfordii NC_052233.1 2 CH_twi_100 3 5 0.000000186475

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001