Functional clusters
Information
- Type MapMan
- Description Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.iron-mobilizing coumarin biosynthesis.feruloyl-CoA 6-hydroxylase
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Aquilegia oxysepala | CHR01 | 1 | CH_aox_320 | 2 | 3 | 0.000721742 |
Citrus clementina | scaffold_2 | 1 | CH_ccl_84 | 4 | 6 | 0.000000000372563 |
Daucus carota | DCARv2_Chr6 | 1 | CH_dca_115 | 3 | 3 | 0.000000122031 |
Daucus carota | DCARv2_Chr8 | 1 | CH_dca_195 | 3 | 10 | 0.0000146331 |
Durio zibethinus | NW_019168481.1 | 1 | CH_dzi_18 | 5 | 5 | 0.00000000000000436163 |
Gossypium hirsutum | A08 | 1 | CH_ghi_280 | 3 | 3 | 0.00000030587 |
Gossypium hirsutum | D13 | 1 | CH_ghi_281 | 3 | 3 | 0.00000030587 |
Gossypium raimondii | Chr04 | 1 | CH_gra_146 | 3 | 3 | 0.000000241431 |
Helianthus annuus | HanXRQChr13 | 1 | CH_han_323 | 3 | 8 | 0.00000250796 |
Helianthus annuus | HanXRQChr11 | 1 | CH_han_677 | 2 | 2 | 0.000579643 |
Lonicera japonica | GWHAAZE00000001 | 1 | CH_lonja_126 | 4 | 15 | 0.000000000879339 |
Lactuca sativa | Lsat_1_v8_lg_1 | 1 | CH_lsa_145 | 4 | 14 | 0.0000000142621 |
Manihot esculenta | Chromosome07 | 1 | CH_mes_182 | 3 | 3 | 0.000000313221 |
Manihot esculenta | Chromosome10 | 1 | CH_mes_91 | 4 | 4 | 0.0000000000478185 |
Nelumbo nucifera | chr1 | 1 | CH_nnu_99 | 3 | 7 | 0.0000000998007 |
Nicotiana tabacum | Nitab4.5_0000254 | 1 | CH_nta_177 | 2 | 3 | 0.000987456 |
Petunia axillaris | Peaxi162Scf00062 | 1 | CH_pax_342 | 2 | 2 | 0.000703556 |
Populus trichocarpa | Chr01 | 1 | CH_ptr_413 | 2 | 4 | 0.000346781 |
Quercus lobata | 1 | 1 | CH_qlo_50 | 7 | 10 | 6.44417e-21 |
Salix brachista | GWHAAZH00000001 | 1 | CH_sbr_38 | 4 | 5 | 0.00000000000375343 |
Trochodendron aralioides | group7 | 1 | CH_tar_124 | 3 | 4 | 0.0000000865036 |
Theobroma cacao | Chromosome_9 | 1 | CH_tca_336 | 2 | 2 | 0.000219716 |
Tripterygium wilfordii | NC_052233.1 | 1 | CH_twi_100 | 3 | 5 | 0.000000186475 |
Aquilegia oxysepala | CHR01 | 2 | CH_aox_320 | 2 | 3 | 0.000721742 |
Citrus clementina | scaffold_2 | 2 | CH_ccl_84 | 4 | 6 | 0.000000000372563 |
Daucus carota | DCARv2_Chr6 | 2 | CH_dca_115 | 3 | 3 | 0.000000122031 |
Daucus carota | DCARv2_Chr8 | 2 | CH_dca_195 | 3 | 10 | 0.0000146331 |
Durio zibethinus | NW_019168481.1 | 2 | CH_dzi_18 | 5 | 5 | 0.00000000000000436163 |
Gossypium hirsutum | A08 | 2 | CH_ghi_280 | 3 | 3 | 0.00000030587 |
Gossypium hirsutum | D13 | 2 | CH_ghi_281 | 3 | 3 | 0.00000030587 |
Gossypium raimondii | Chr04 | 2 | CH_gra_146 | 3 | 3 | 0.000000241431 |
Helianthus annuus | HanXRQChr13 | 2 | CH_han_323 | 3 | 8 | 0.00000250796 |
Helianthus annuus | HanXRQChr11 | 2 | CH_han_677 | 2 | 2 | 0.000579643 |
Lonicera japonica | GWHAAZE00000001 | 2 | CH_lonja_126 | 4 | 15 | 0.000000000879339 |
Lactuca sativa | Lsat_1_v8_lg_1 | 2 | CH_lsa_145 | 4 | 14 | 0.0000000142621 |
Manihot esculenta | Chromosome07 | 2 | CH_mes_182 | 3 | 3 | 0.000000313221 |
Manihot esculenta | Chromosome10 | 2 | CH_mes_91 | 4 | 4 | 0.0000000000478185 |
Nelumbo nucifera | chr1 | 2 | CH_nnu_99 | 3 | 7 | 0.0000000998007 |
Nicotiana tabacum | Nitab4.5_0000254 | 2 | CH_nta_177 | 2 | 3 | 0.000987456 |
Petunia axillaris | Peaxi162Scf00062 | 2 | CH_pax_342 | 2 | 2 | 0.000703556 |
Populus trichocarpa | Chr01 | 2 | CH_ptr_413 | 2 | 4 | 0.000346781 |
Quercus lobata | 1 | 2 | CH_qlo_50 | 7 | 10 | 6.44417e-21 |
Salix brachista | GWHAAZH00000001 | 2 | CH_sbr_38 | 4 | 5 | 0.00000000000375343 |
Trochodendron aralioides | group7 | 2 | CH_tar_124 | 3 | 4 | 0.0000000865036 |
Theobroma cacao | Chromosome_9 | 2 | CH_tca_336 | 2 | 2 | 0.000219716 |
Tripterygium wilfordii | NC_052233.1 | 2 | CH_twi_100 | 3 | 5 | 0.000000186475 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |