Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.nitrogen assimilation.nitrate assimilation.nitrate reductase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_5 1 CH_amhyb_209 2 2 0.000252525
Citrullus lanatus CG_Chr03 1 CH_cla_176 2 2 0.000266134
Daucus carota DCARv2_Chr4 1 CH_dca_318 2 2 0.000191333
Davidia involucrata GWHABJS00000011 1 CH_din_453 2 3 0.000450094
Glycine max Gm14 1 CH_gma_461 2 2 0.000227734
Magnolia biondii Chr03 1 CH_mbi_593 2 5 0.000485625
Rhododendron simsii chr06 1 CH_rsi_364 2 2 0.0000645307
Salvia bowleyana GWHASIU00000005 1 CH_sbo_368 2 4 0.000272975
Sechium edule LG03 1 CH_sed_265 2 2 0.000214026
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_98 3 6 0.00000017189
Vanilla planifolia CM028154.1 1 CH_vpl_189 2 2 0.000073888
Amaranthus hybridus AmaHy_arrow1_Scaffold_5 2 CH_amhyb_209 2 2 0.000252525
Citrullus lanatus CG_Chr03 2 CH_cla_176 2 2 0.000266134
Daucus carota DCARv2_Chr4 2 CH_dca_318 2 2 0.000191333
Davidia involucrata GWHABJS00000011 2 CH_din_453 2 3 0.000450094
Glycine max Gm14 2 CH_gma_461 2 2 0.000227734
Magnolia biondii Chr03 2 CH_mbi_593 2 5 0.000485625
Rhododendron simsii chr06 2 CH_rsi_364 2 2 0.0000645307
Salvia bowleyana GWHASIU00000005 2 CH_sbo_368 2 4 0.000272975
Sechium edule LG03 2 CH_sed_265 2 2 0.000214026
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_98 3 6 0.00000017189
Vanilla planifolia CM028154.1 2 CH_vpl_189 2 2 0.000073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001