Functional clusters
Information
- Type MapMan
- Description Nutrient uptake.metal homeostasis.iron.regulation.bHLH-Ib-class iron/copper homeostasis regulator
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr1 | 1 | CH_acertr_305 | 2 | 2 | 0.000070497 |
| Aquilegia oxysepala | CHR02 | 1 | CH_aox_224 | 2 | 2 | 0.000240597 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_347 | 2 | 2 | 0.000286492 |
| Brassica carinata | ChrC07 | 1 | CH_bca_115 | 7 | 80 | 0.000000000628361 |
| Brassica carinata | ChrB01 | 1 | CH_bca_184 | 4 | 5 | 0.000000016395 |
| Brassica carinata | ChrC07 | 1 | CH_bca_2 | 9 | 12 | 6.05841e-24 |
| Brassica carinata | ChrB02 | 1 | CH_bca_458 | 3 | 3 | 0.00000786879 |
| Brassica carinata | ChrB02 | 1 | CH_bca_459 | 3 | 3 | 0.00000786879 |
| Brassica carinata | ChrC02 | 1 | CH_bca_81 | 5 | 8 | 0.0000000000745306 |
| Brassica napus | C06 | 1 | CH_bna_150 | 4 | 6 | 0.0000000117517 |
| Brassica napus | A04 | 1 | CH_bna_166 | 4 | 7 | 0.0000000274146 |
| Brassica napus | A09 | 1 | CH_bna_313 | 3 | 3 | 0.00000281662 |
| Brassica napus | C08 | 1 | CH_bna_427 | 3 | 5 | 0.0000281539 |
| Brassica napus | C04 | 1 | CH_bna_67 | 5 | 9 | 0.0000000000265426 |
| Brassica oleracea | C8 | 1 | CH_bol_130 | 3 | 3 | 0.000000583347 |
| Brassica oleracea | C4 | 1 | CH_bol_154 | 3 | 4 | 0.00000233304 |
| Brassica rapa | A09 | 1 | CH_bra_128 | 3 | 3 | 0.00000154824 |
| Brassica rapa | A04 | 1 | CH_bra_77 | 4 | 8 | 0.0000000302167 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 1 | CH_bvu_55 | 4 | 9 | 0.0000000010723 |
| Cannabis sativa | NC_044377.1 | 1 | CH_cansat_400 | 2 | 2 | 0.000984963 |
| Cannabis sativa | NC_044379.1 | 1 | CH_cansat_73 | 4 | 6 | 0.000000000191099 |
| Capsicum annuum | PGAv.1.6.scaffold641 | 1 | CH_can_276 | 2 | 2 | 0.0000826105 |
| Corylus avellana | 10 | 1 | CH_cav_123 | 3 | 5 | 0.000000352659 |
| Carpinus fangiana | Cfa08 | 1 | CH_cfa_367 | 2 | 3 | 0.000681569 |
| Cardamine hirsuta | Chr5 | 1 | CH_chi_420 | 2 | 2 | 0.000691204 |
| Citrullus lanatus | CG_Chr04 | 1 | CH_cla_37 | 3 | 4 | 0.0000000472183 |
| Cucumis melo | chr08 | 1 | CH_cme_236 | 2 | 2 | 0.000200133 |
| Capsella rubella | scaffold_5 | 1 | CH_cru_415 | 2 | 2 | 0.000731154 |
| Cucumis sativus L. | chr4 | 1 | CH_csa_262 | 2 | 2 | 0.000250428 |
| Daucus carota | DCARv2_Chr6 | 1 | CH_dca_131 | 3 | 9 | 0.000000512433 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 1 | CH_eca_101 | 3 | 4 | 0.0000000120811 |
| Erythranthe guttata | scaffold_2 | 1 | CH_egut_431 | 2 | 2 | 0.000436888 |
| Eutrema salsugineum | scaffold_19 | 1 | CH_esa_88 | 3 | 3 | 0.000000173971 |
| Glycine max | Gm03 | 1 | CH_gma_485 | 2 | 3 | 0.000341591 |
| Helianthus annuus | HanXRQChr10 | 1 | CH_han_116 | 4 | 5 | 0.0000000000302945 |
| Lupinus albus | Lalb_Chr25 | 1 | CH_lal_267 | 2 | 2 | 0.000157447 |
| Lotus japonicus | chr1 | 1 | CH_lja_100 | 3 | 3 | 0.0000000306812 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_78 | 4 | 6 | 0.00000000000611125 |
| Malus domestica | Chr14 | 1 | CH_mdo_381 | 2 | 2 | 0.0000379212 |
| Medicago truncatula | chr1 | 1 | CH_mtr_261 | 3 | 4 | 0.0000000405134 |
| Olea europaea | chr2 | 1 | CH_oeu_24 | 4 | 5 | 0.0000000000342212 |
| Prunus persica | Pp07 | 1 | CH_ppe_88 | 4 | 6 | 0.0000000000186801 |
| Pisum sativum | chr3LG5 | 1 | CH_psa_115 | 3 | 5 | 0.000000163251 |
| Populus trichocarpa | Chr06 | 1 | CH_ptr_376 | 2 | 2 | 0.0001734 |
| Salix brachista | GWHAAZH00000006 | 1 | CH_sbr_362 | 2 | 3 | 0.000567096 |
| Simmondsia chinensis | GWHAASQ00000013 | 1 | CH_sci_252 | 2 | 2 | 0.000510856 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_160 | 5 | 5 | 0.00000000000000236575 |
| Solanum lycopersicum | SL4.0ch10 | 1 | CH_sly_134 | 3 | 4 | 0.00000002067 |
| Schrenkiella parvula | ch5-1 | 1 | CH_spa_291 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch10 | 1 | CH_spe_102 | 3 | 3 | 0.00000000296764 |
| Selenicereus undatus | Scaffold_10417 | 1 | CH_sun_277 | 2 | 2 | 0.000726639 |
| Selenicereus undatus | Scaffold_3410 | 1 | CH_sun_49 | 3 | 4 | 0.000000316785 |
| Acer truncatum | chr1 | 2 | CH_acertr_305 | 2 | 2 | 0.000070497 |
| Aquilegia oxysepala | CHR02 | 2 | CH_aox_224 | 2 | 2 | 0.000240597 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_347 | 2 | 2 | 0.000286492 |
| Brassica carinata | ChrC07 | 2 | CH_bca_115 | 7 | 80 | 0.000000000628361 |
| Brassica carinata | ChrB01 | 2 | CH_bca_184 | 4 | 5 | 0.000000016395 |
| Brassica carinata | ChrC07 | 2 | CH_bca_2 | 9 | 12 | 6.05841e-24 |
| Brassica carinata | ChrB02 | 2 | CH_bca_458 | 3 | 3 | 0.00000786879 |
| Brassica carinata | ChrB02 | 2 | CH_bca_459 | 3 | 3 | 0.00000786879 |
| Brassica carinata | ChrC02 | 2 | CH_bca_81 | 5 | 8 | 0.0000000000745306 |
| Brassica oleracea | C8 | 2 | CH_bol_130 | 3 | 3 | 0.000000583347 |
| Brassica oleracea | C4 | 2 | CH_bol_154 | 3 | 4 | 0.00000233304 |
| Brassica rapa | A09 | 2 | CH_bra_128 | 3 | 3 | 0.00000154824 |
| Brassica rapa | A04 | 2 | CH_bra_77 | 4 | 8 | 0.0000000302167 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 2 | CH_bvu_55 | 4 | 9 | 0.0000000010723 |
| Cannabis sativa | NC_044377.1 | 2 | CH_cansat_400 | 2 | 2 | 0.000984963 |
| Cannabis sativa | NC_044379.1 | 2 | CH_cansat_73 | 4 | 6 | 0.000000000191099 |
| Capsicum annuum | PGAv.1.6.scaffold641 | 2 | CH_can_276 | 2 | 2 | 0.0000826105 |
| Corylus avellana | 10 | 2 | CH_cav_123 | 3 | 5 | 0.000000352659 |
| Carpinus fangiana | Cfa08 | 2 | CH_cfa_367 | 2 | 3 | 0.000681569 |
| Cardamine hirsuta | Chr5 | 2 | CH_chi_420 | 2 | 2 | 0.000691204 |
| Citrullus lanatus | CG_Chr04 | 2 | CH_cla_37 | 3 | 4 | 0.0000000472183 |
| Cucumis melo | chr08 | 2 | CH_cme_236 | 2 | 2 | 0.000200133 |
| Capsella rubella | scaffold_5 | 2 | CH_cru_415 | 2 | 2 | 0.000731154 |
| Cucumis sativus L. | chr4 | 2 | CH_csa_262 | 2 | 2 | 0.000250428 |
| Daucus carota | DCARv2_Chr6 | 2 | CH_dca_131 | 3 | 9 | 0.000000512433 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 2 | CH_eca_101 | 3 | 4 | 0.0000000120811 |
| Erythranthe guttata | scaffold_2 | 2 | CH_egut_431 | 2 | 2 | 0.000436888 |
| Eutrema salsugineum | scaffold_19 | 2 | CH_esa_88 | 3 | 3 | 0.000000173971 |
| Glycine max | Gm03 | 2 | CH_gma_485 | 2 | 3 | 0.000341591 |
| Helianthus annuus | HanXRQChr10 | 2 | CH_han_116 | 4 | 5 | 0.0000000000302945 |
| Lupinus albus | Lalb_Chr25 | 2 | CH_lal_267 | 2 | 2 | 0.000157447 |
| Lotus japonicus | chr1 | 2 | CH_lja_100 | 3 | 3 | 0.0000000306812 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_78 | 4 | 6 | 0.00000000000611125 |
| Malus domestica | Chr14 | 2 | CH_mdo_381 | 2 | 2 | 0.0000379212 |
| Olea europaea | chr2 | 2 | CH_oeu_24 | 4 | 5 | 0.0000000000342212 |
| Prunus persica | Pp07 | 2 | CH_ppe_88 | 4 | 6 | 0.0000000000186801 |
| Pisum sativum | chr3LG5 | 2 | CH_psa_115 | 3 | 5 | 0.000000163251 |
| Populus trichocarpa | Chr06 | 2 | CH_ptr_376 | 2 | 2 | 0.0001734 |
| Salix brachista | GWHAAZH00000006 | 2 | CH_sbr_362 | 2 | 3 | 0.000567096 |
| Simmondsia chinensis | GWHAASQ00000013 | 2 | CH_sci_252 | 2 | 2 | 0.000510856 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_160 | 5 | 5 | 0.00000000000000236575 |
| Solanum lycopersicum | SL4.0ch10 | 2 | CH_sly_134 | 3 | 4 | 0.00000002067 |
| Schrenkiella parvula | ch5-1 | 2 | CH_spa_291 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch10 | 2 | CH_spe_102 | 3 | 3 | 0.00000000296764 |
| Selenicereus undatus | Scaffold_10417 | 2 | CH_sun_277 | 2 | 2 | 0.000726639 |
| Selenicereus undatus | Scaffold_3410 | 2 | CH_sun_49 | 3 | 4 | 0.000000316785 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |