Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.nitrogen assimilation.glutamate deamination.glutamate dehydrogenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Phaseolus vulgaris Chr10 1 CH_pvu_471 2 2 0.000734727
Simmondsia chinensis GWHAASQ00000012 1 CH_sci_267 2 2 0.000510856
Sequoiadendron giganteum chr10 1 CH_sgi_1135 2 2 0.000146145
Selaginella moellendorffii scaffold_74 1 CH_smo_50 3 3 0.00000374023
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_416 2 2 0.000756974
Vigna mungo CM024078.1 1 CH_vmu_401 2 2 0.000646141
Vitis vinifera chr16 1 CH_vvi_64 5 7 0.00000000000132832
Phaseolus vulgaris Chr10 2 CH_pvu_471 2 2 0.000734727
Simmondsia chinensis GWHAASQ00000012 2 CH_sci_267 2 2 0.000510856
Sequoiadendron giganteum chr10 2 CH_sgi_1135 2 2 0.000146145
Selaginella moellendorffii scaffold_74 2 CH_smo_50 3 3 0.00000374023
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_416 2 2 0.000756974
Vigna mungo CM024078.1 2 CH_vmu_401 2 2 0.000646141
Vitis vinifera chr16 2 CH_vvi_64 5 7 0.00000000000132832

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001