Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.metal homeostasis.iron.iron storage.iron transporter (VIT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr11 1 CH_acertr_74 4 10 0.00000000330941
Cannabis sativa NC_044376.1 1 CH_cansat_339 2 2 0.000393985
Corylus avellana 9 1 CH_cav_356 2 2 0.000230008
Citrus clementina scaffold_2 1 CH_ccl_305 2 2 0.0000820311
Carya illinoinensis Chr06 1 CH_cil_354 2 2 0.0000619828
Cucumis melo chr09 1 CH_cme_237 2 2 0.000200133
Cucumis sativus L. chr5 1 CH_csa_263 2 2 0.000250428
Durio zibethinus NW_019167971.1 1 CH_dzi_284 2 2 0.000278093
Malus domestica Chr16 1 CH_mdo_558 2 2 0.000227527
Medicago truncatula chr8 1 CH_mtr_613 2 2 0.000123259
Nelumbo nucifera chr3 1 CH_nnu_104 3 4 0.000000114062
Prunus persica Pp01 1 CH_ppe_410 2 2 0.000223789
Papaver somniferum NC_039358.1 1 CH_pso_580 2 2 0.000337849
Papaver somniferum NW_020620714.1 1 CH_pso_581 2 2 0.000337849
Populus trichocarpa Chr10 1 CH_ptr_377 2 2 0.0001734
Phaseolus vulgaris Chr02 1 CH_pvu_197 3 9 0.00000271976
Quercus lobata 3 1 CH_qlo_1036 2 4 0.00092924
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_262 3 5 0.0000000953496
Sechium edule LG11 1 CH_sed_254 2 2 0.000214026
Theobroma cacao Chromosome_2 1 CH_tca_321 2 3 0.000219708
Vitis vinifera chr1 1 CH_vvi_341 2 2 0.000228189
Zea mays 2 1 CH_zma_222 2 2 0.000306788
Acer truncatum chr11 2 CH_acertr_74 4 10 0.00000000330941
Cannabis sativa NC_044376.1 2 CH_cansat_339 2 2 0.000393985
Corylus avellana 9 2 CH_cav_356 2 2 0.000230008
Citrus clementina scaffold_2 2 CH_ccl_305 2 2 0.0000820311
Carya illinoinensis Chr06 2 CH_cil_354 2 2 0.0000619828
Cucumis melo chr09 2 CH_cme_237 2 2 0.000200133
Cucumis sativus L. chr5 2 CH_csa_263 2 2 0.000250428
Durio zibethinus NW_019167971.1 2 CH_dzi_284 2 2 0.000278093
Eucalyptus grandis Chr02 2 CH_egr_833 2 2 0.000351165
Malus domestica Chr16 2 CH_mdo_558 2 2 0.000227527
Nelumbo nucifera chr3 2 CH_nnu_104 3 4 0.000000114062
Prunus persica Pp01 2 CH_ppe_410 2 2 0.000223789
Papaver somniferum NC_039358.1 2 CH_pso_580 2 2 0.000337849
Papaver somniferum NW_020620714.1 2 CH_pso_581 2 2 0.000337849
Populus trichocarpa Chr10 2 CH_ptr_377 2 2 0.0001734
Phaseolus vulgaris Chr02 2 CH_pvu_197 3 9 0.00000271976
Quercus lobata 3 2 CH_qlo_1036 2 4 0.00092924
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_262 3 5 0.0000000953496
Sechium edule LG11 2 CH_sed_254 2 2 0.000214026
Theobroma cacao Chromosome_2 2 CH_tca_321 2 3 0.000219708
Vitis vinifera chr1 2 CH_vvi_341 2 2 0.000228189
Zea mays 2 2 CH_zma_222 2 2 0.000306788

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001