Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.phytosiderophore biosynthesis.nicotianamine synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr7 1 CH_acertr_406 2 2 0.000211491
Brassica carinata ChrC06 1 CH_bca_93 4 5 0.000000000199985
Cannabis sativa NC_044375.1 1 CH_cansat_160 3 6 0.00000258633
Capsicum annuum PGAv.1.6.scaffold1076 1 CH_can_258 2 2 0.0000826105
Citrus clementina scaffold_1 1 CH_ccl_75 4 6 0.000000000124196
Cucumis melo chr05 1 CH_cme_270 2 2 0.000400267
Cucumis sativus L. chr2 1 CH_csa_292 2 2 0.000500856
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_340 2 2 0.000134617
Lupinus albus Lalb_Chr21 1 CH_lal_40 4 4 0.0000000000303595
Lonicera japonica GWHAAZE00000006 1 CH_lonja_187 3 3 0.0000000537991
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_443 2 2 0.000308404
Magnolia biondii Chr14 1 CH_mbi_206 3 8 0.000000792362
Malus domestica Chr13 1 CH_mdo_545 2 2 0.000227527
Manihot esculenta Chromosome14 1 CH_mes_205 3 5 0.00000111842
Manihot esculenta Chromosome08 1 CH_mes_483 2 2 0.000915947
Oryza sativa ssp. japonica chr03 1 CH_osa_264 2 2 0.000158437
Papaver somniferum NC_039359.1 1 CH_pso_137 5 16 0.000000000446981
Papaver somniferum NC_039363.1 1 CH_pso_348 3 4 0.00000699942
Papaver somniferum NC_039359.1 1 CH_pso_405 3 6 0.0000349833
Papaver somniferum NC_039359.1 1 CH_pso_662 3 14 0.000635693
Populus trichocarpa Chr10 1 CH_ptr_421 2 2 0.000346801
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_654 2 2 0.000239192
Salix brachista GWHAAZH00000004 1 CH_sbr_86 4 11 0.00000000866421
Zea mays 9 1 CH_zma_31 5 16 0.0000000000281837
Acer truncatum chr7 2 CH_acertr_406 2 2 0.000211491
Brassica carinata ChrC06 2 CH_bca_93 4 5 0.000000000199985
Cannabis sativa NC_044375.1 2 CH_cansat_160 3 6 0.00000258633
Capsicum annuum PGAv.1.6.scaffold1076 2 CH_can_258 2 2 0.0000826105
Citrus clementina scaffold_1 2 CH_ccl_75 4 6 0.000000000124196
Cucumis melo chr05 2 CH_cme_270 2 2 0.000400267
Cucumis sativus L. chr2 2 CH_csa_292 2 2 0.000500856
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_340 2 2 0.000134617
Lupinus albus Lalb_Chr21 2 CH_lal_40 4 4 0.0000000000303595
Lonicera japonica GWHAAZE00000006 2 CH_lonja_187 3 3 0.0000000537991
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_443 2 2 0.000308404
Magnolia biondii Chr14 2 CH_mbi_206 3 8 0.000000792362
Malus domestica Chr13 2 CH_mdo_545 2 2 0.000227527
Manihot esculenta Chromosome14 2 CH_mes_205 3 5 0.00000111842
Manihot esculenta Chromosome08 2 CH_mes_483 2 2 0.000915947
Oryza sativa ssp. japonica chr03 2 CH_osa_264 2 2 0.000158437
Papaver somniferum NC_039359.1 2 CH_pso_137 5 16 0.000000000446981
Papaver somniferum NC_039363.1 2 CH_pso_348 3 4 0.00000699942
Papaver somniferum NC_039359.1 2 CH_pso_405 3 6 0.0000349833
Papaver somniferum NC_039359.1 2 CH_pso_662 3 14 0.000635693
Populus trichocarpa Chr10 2 CH_ptr_421 2 2 0.000346801
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_654 2 2 0.000239192
Salix brachista GWHAAZH00000004 2 CH_sbr_86 4 11 0.00000000866421
Zea mays 9 2 CH_zma_31 5 16 0.0000000000281837

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001