Functional clusters
Information
- Type MapMan
- Description Nutrient uptake.nitrogen assimilation.nitrate uptake system
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Marchantia polymorpha | scaffold_20 | 1 | CH_mpo_1 | 14 | 15 | 6.77746e-39 |
| Physcomitrium patens | Chr22 | 1 | CH_ppa_61 | 3 | 5 | 0.0000123838 |
| Zea mays | 1 | 1 | CH_zma_211 | 3 | 10 | 0.000263032 |
| Marchantia polymorpha | scaffold_20 | 2 | CH_mpo_1 | 14 | 15 | 6.77746e-39 |
| Physcomitrium patens | Chr22 | 2 | CH_ppa_61 | 3 | 5 | 0.0000123838 |
| Zea mays | 1 | 2 | CH_zma_211 | 3 | 10 | 0.000263032 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 25.1.2.1 | Nutrient uptake.nitrogen assimilation.nitrate uptake system.nitrate transceptor (NRT1.1) | 34 |
| 25.1.2.2 | Nutrient uptake.nitrogen assimilation.nitrate uptake system.signalling factor (NRG2) | 4 |
| 25.1.2.3 | Nutrient uptake.nitrogen assimilation.nitrate uptake system.transcriptional repressor (NIGT) | 2 |
| 25.1.2.4.2 | Nutrient uptake.nitrogen assimilation.nitrate uptake system.nitrate-CPK-NLP signalling network.transcription factor (NLP6/7) | 8 |
| 25.1.2.6 | Nutrient uptake.nitrogen assimilation.nitrate uptake system.regulatory factor (NRT3) | 49 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |