Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.nitrogen assimilation.nitrate uptake system.regulatory factor (NRT3)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Coffea canephora chr4 1 CH_ccan_230 2 7 0.0000894361
Daucus carota DCARv2_Chr5 1 CH_dca_106 3 3 0.0000000610156
Daucus carota DCARv2_Chr6 1 CH_dca_436 2 2 0.000637775
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_369 2 2 0.000134617
Erythranthe guttata scaffold_17 1 CH_egut_176 3 3 0.000000278364
Fragaria x ananassa Fvb5-4 1 CH_fan_120 3 3 0.0000000431407
Fragaria x ananassa Fvb5-3 1 CH_fan_121 3 3 0.0000000431407
Fragaria x ananassa Fvb5-1 1 CH_fan_597 2 2 0.00066613
Fragaria vesca Fvb5 1 CH_fve_278 2 2 0.0000589102
Helianthus annuus HanXRQChr09 1 CH_han_117 4 5 0.0000000000302945
Lonicera japonica GWHAAZE00000005 1 CH_lonja_489 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_90 4 6 0.0000000000916612
Medicago truncatula chr4 1 CH_mtr_537 2 2 0.0000410863
Nelumbo nucifera chr3 1 CH_nnu_334 2 2 0.000130804
Olea europaea scaffold307 1 CH_oeu_360 2 3 0.000480389
Petunia axillaris Peaxi162Scf00089 1 CH_pax_316 2 2 0.000422134
Petunia axillaris Peaxi162Scf00801 1 CH_pax_317 2 2 0.000422134
Papaver somniferum NC_039361.1 1 CH_pso_487 2 2 0.00013514
Populus trichocarpa Chr15 1 CH_ptr_392 2 2 0.0001734
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_214 3 4 0.00000000953543
Striga asiatica scaffold90 1 CH_sas_66 2 2 0.0000625371
Simmondsia chinensis GWHAASQ00000004 1 CH_sci_172 2 2 0.0000851426
Sequoiadendron giganteum chr6 1 CH_sgi_926 2 2 0.0000487151
Solanum lycopersicum SL4.0ch03 1 CH_sly_346 2 2 0.0000586941
Solanum pennellii Spenn-ch03 1 CH_spe_295 2 2 0.000044479
Coffea canephora chr4 2 CH_ccan_230 2 7 0.0000894361
Daucus carota DCARv2_Chr5 2 CH_dca_106 3 3 0.0000000610156
Daucus carota DCARv2_Chr6 2 CH_dca_436 2 2 0.000637775
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_369 2 2 0.000134617
Erythranthe guttata scaffold_17 2 CH_egut_176 3 3 0.000000278364
Fragaria x ananassa Fvb5-4 2 CH_fan_120 3 3 0.0000000431407
Fragaria x ananassa Fvb5-3 2 CH_fan_121 3 3 0.0000000431407
Fragaria x ananassa Fvb5-1 2 CH_fan_597 2 2 0.00066613
Fragaria vesca Fvb5 2 CH_fve_278 2 2 0.0000589102
Helianthus annuus HanXRQChr09 2 CH_han_117 4 5 0.0000000000302945
Lonicera japonica GWHAAZE00000005 2 CH_lonja_489 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_90 4 6 0.0000000000916612
Nelumbo nucifera chr3 2 CH_nnu_334 2 2 0.000130804
Olea europaea scaffold307 2 CH_oeu_360 2 3 0.000480389
Petunia axillaris Peaxi162Scf00089 2 CH_pax_316 2 2 0.000422134
Petunia axillaris Peaxi162Scf00801 2 CH_pax_317 2 2 0.000422134
Papaver somniferum NC_039361.1 2 CH_pso_487 2 2 0.00013514
Populus trichocarpa Chr15 2 CH_ptr_392 2 2 0.0001734
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_214 3 4 0.00000000953543
Striga asiatica scaffold90 2 CH_sas_66 2 2 0.0000625371
Simmondsia chinensis GWHAASQ00000004 2 CH_sci_172 2 2 0.0000851426
Sequoiadendron giganteum chr6 2 CH_sgi_926 2 2 0.0000487151
Solanum lycopersicum SL4.0ch03 2 CH_sly_346 2 2 0.0000586941
Solanum pennellii Spenn-ch03 2 CH_spe_295 2 2 0.000044479

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001