Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.sulfur assimilation.sulfate assimilation.ATP sulfurylase (APS)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Capsicum annuum PGAv.1.6.scaffold638 1 CH_can_324 2 3 0.000247821
Carica papaya supercontig_11 1 CH_cpa_351 2 2 0.000570396
Davidia involucrata GWHABJS00000014 1 CH_din_432 2 2 0.000300075
Lonicera japonica GWHAAZE00000006 1 CH_lonja_254 3 8 0.00000120479
Magnolia biondii Chr04 1 CH_mbi_536 2 2 0.000291397
Medicago truncatula chr6 1 CH_mtr_262 3 4 0.0000000405134
Oryza sativa ssp. japonica chr04 1 CH_osa_277 2 2 0.000158437
Quercus lobata CM012294 1 CH_qlo_1053 2 3 0.000929264
Solanum lycopersicum SL4.0ch03 1 CH_sly_424 2 2 0.000176082
Schrenkiella parvula ch7-4 1 CH_spa_304 2 2 0.00078734
Solanum pennellii Spenn-ch03 1 CH_spe_373 2 2 0.000133437
Capsicum annuum PGAv.1.6.scaffold638 2 CH_can_324 2 3 0.000247821
Carica papaya supercontig_11 2 CH_cpa_351 2 2 0.000570396
Davidia involucrata GWHABJS00000014 2 CH_din_432 2 2 0.000300075
Lonicera japonica GWHAAZE00000006 2 CH_lonja_254 3 8 0.00000120479
Magnolia biondii Chr04 2 CH_mbi_536 2 2 0.000291397
Oryza sativa ssp. japonica chr04 2 CH_osa_277 2 2 0.000158437
Quercus lobata CM012294 2 CH_qlo_1053 2 3 0.000929264
Solanum lycopersicum SL4.0ch03 2 CH_sly_424 2 2 0.000176082
Schrenkiella parvula ch7-4 2 CH_spa_304 2 2 0.00078734
Solanum pennellii Spenn-ch03 2 CH_spe_373 2 2 0.000133437

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001