Functional clusters

Information

  • Type Gene Ontology
  • Description response to stimulus

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aegilops tauschii 6D 3 CH_ata_332 18 27 0.000268326
Arabidopsis thaliana Chr4 3 CH_ath_561 30 75 0.000260632
Arabidopsis thaliana Chr1 3 CH_ath_679 30 78 0.000772857
Lolium perenne Lp_chr7_0.1 3 CH_lpe_390 11 15 0.000433674
Magnolia biondii Chr15 3 CH_mbi_308 17 22 0.00000249071
Oryza alta GWHAZTO00000023 3 CH_oal_346 30 75 0.0000053847
Secale cereale GWHASIY00000006 3 CH_sce_216 30 44 0.000000109365
Secale cereale GWHASIY00000002 3 CH_sce_504 15 17 0.0000799675
Sequoiadendron giganteum chr4 3 CH_sgi_699 24 33 0.000000583792
Selaginella moellendorffii scaffold_11 3 CH_smo_157 30 60 0.000309955
Saccharum spontaneum Chr5B 3 CH_ssp_758 28 49 0.000214426
Aegilops tauschii 6D 4 CH_ata_332 18 27 0.000268326
Arabidopsis thaliana Chr4 4 CH_ath_561 30 75 0.000260632
Arabidopsis thaliana Chr1 4 CH_ath_679 30 78 0.000772857
Lolium perenne Lp_chr7_0.1 4 CH_lpe_390 11 15 0.000433674
Magnolia biondii Chr15 4 CH_mbi_308 17 22 0.00000249071
Oryza alta GWHAZTO00000023 4 CH_oal_346 30 75 0.0000053847
Secale cereale GWHASIY00000006 4 CH_sce_216 30 44 0.000000109365
Secale cereale GWHASIY00000002 4 CH_sce_504 15 17 0.0000799675
Sequoiadendron giganteum chr4 4 CH_sgi_699 24 33 0.000000583792
Selaginella moellendorffii scaffold_11 4 CH_smo_157 30 60 0.000309955
Saccharum spontaneum Chr5B 4 CH_ssp_758 28 49 0.000214426

Available child term results

Ontology identifier Description Number of clusters
GO:0000012 single strand break repair 4
GO:0000077 DNA damage checkpoint signaling 4
GO:0000160 phosphorelay signal transduction system 60
GO:0000302 response to reactive oxygen species 6
GO:0000303 response to superoxide 4
GO:0000304 response to singlet oxygen 8
GO:0000706 meiotic DNA double-strand break processing 2
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair 2
GO:0000730 DNA recombinase assembly 2
GO:0001666 response to hypoxia 2
GO:0001778 plasma membrane repair 20
GO:0002213 defense response to insect 28
GO:0002215 defense response to nematode 6
GO:0002220 innate immune response activating cell surface receptor signaling pathway 6
GO:0002221 pattern recognition receptor signaling pathway 2
GO:0002229 defense response to oomycetes 4
GO:0002230 positive regulation of defense response to virus by host 14
GO:0002237 response to molecule of bacterial origin 4
GO:0002238 response to molecule of fungal origin 4
GO:0002239 response to oomycetes 14
GO:0002240 response to molecule of oomycetes origin 8
GO:0002679 respiratory burst involved in defense response 10
GO:0002752 cell surface pattern recognition receptor signaling pathway 4
GO:0002758 innate immune response-activating signal transduction 8
GO:0005513 detection of calcium ion 26
GO:0006281 DNA repair 4
GO:0006283 transcription-coupled nucleotide-excision repair 6
GO:0006284 base-excision repair 2
GO:0006289 nucleotide-excision repair 2
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006295 nucleotide-excision repair, DNA incision, 3'-to lesion 2
GO:0006805 xenobiotic metabolic process 4
GO:0006935 chemotaxis 2
GO:0006950 response to stress 28
GO:0006952 defense response 146
GO:0006972 hyperosmotic response 4
GO:0006979 response to oxidative stress 18
GO:0006982 response to lipid hydroperoxide 2
GO:0006983 ER overload response 4
GO:0006995 cellular response to nitrogen starvation 2
GO:0007094 mitotic spindle assembly checkpoint signaling 4
GO:0007095 mitotic G2 DNA damage checkpoint signaling 4
GO:0007165 signal transduction 12
GO:0007166 cell surface receptor signaling pathway 74
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway 4
GO:0007186 G protein-coupled receptor signaling pathway 2
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway 4
GO:0007219 Notch signaling pathway 2
GO:0007264 small GTPase mediated signal transduction 4
GO:0009266 response to temperature stimulus 2
GO:0009267 cellular response to starvation 2
GO:0009269 response to desiccation 10
GO:0009270 response to humidity 4
GO:0009407 toxin catabolic process 20
GO:0009408 response to heat 42
GO:0009409 response to cold 2
GO:0009414 response to water deprivation 4
GO:0009415 response to water 10
GO:0009416 response to light stimulus 4
GO:0009584 detection of visible light 10
GO:0009590 detection of gravity 2
GO:0009593 detection of chemical stimulus 2
GO:0009595 detection of biotic stimulus 2
GO:0009605 response to external stimulus 8
GO:0009607 response to biotic stimulus 2
GO:0009609 response to symbiotic bacterium 4
GO:0009610 response to symbiotic fungus 2
GO:0009611 response to wounding 18
GO:0009615 response to virus 2
GO:0009620 response to fungus 10
GO:0009624 response to nematode 6
GO:0009625 response to insect 2
GO:0009627 systemic acquired resistance 6
GO:0009628 response to abiotic stimulus 14
GO:0009631 cold acclimation 6
GO:0009635 response to herbicide 2
GO:0009638 phototropism 8
GO:0009643 photosynthetic acclimation 12
GO:0009645 response to low light intensity stimulus 2
GO:0009646 response to absence of light 22
GO:0009649 entrainment of circadian clock 2
GO:0009651 response to salt stress 4
GO:0009682 induced systemic resistance 2
GO:0009723 response to ethylene 2
GO:0009725 response to hormone 2
GO:0009733 response to auxin 196
GO:0009734 auxin-activated signaling pathway 10
GO:0009735 response to cytokinin 4
GO:0009736 cytokinin-activated signaling pathway 26
GO:0009737 response to abscisic acid 2
GO:0009739 response to gibberellin 2
GO:0009741 response to brassinosteroid 10
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009743 response to carbohydrate 2
GO:0009745 sucrose mediated signaling 8
GO:0009747 hexokinase-dependent signaling 4
GO:0009750 response to fructose 2
GO:0009751 response to salicylic acid 10
GO:0009753 response to jasmonic acid 4
GO:0009755 hormone-mediated signaling pathway 14
GO:0009785 blue light signaling pathway 12
GO:0009787 regulation of abscisic acid-activated signaling pathway 20
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 20
GO:0009819 drought recovery 66
GO:0009861 jasmonic acid and ethylene-dependent systemic resistance 6
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 4
GO:0009863 salicylic acid mediated signaling pathway 4
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 2
GO:0009871 jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway 18
GO:0009873 ethylene-activated signaling pathway 90
GO:0009937 regulation of gibberellic acid mediated signaling pathway 4
GO:0009959 negative gravitropism 4
GO:0009966 regulation of signal transduction 2
GO:0009970 cellular response to sulfate starvation 6
GO:0010018 far-red light signaling pathway 6
GO:0010035 response to inorganic substance 8
GO:0010037 response to carbon dioxide 8
GO:0010043 response to zinc ion 16
GO:0010044 response to aluminum ion 18
GO:0010046 response to mycotoxin 12
GO:0010048 vernalization response 8
GO:0010100 negative regulation of photomorphogenesis 2
GO:0010104 regulation of ethylene-activated signaling pathway 2
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010112 regulation of systemic acquired resistance 42
GO:0010114 response to red light 2
GO:0010157 response to chlorate 4
GO:0010165 response to X-ray 2
GO:0010167 response to nitrate 6
GO:0010183 pollen tube guidance 14
GO:0010186 positive regulation of cellular defense response 4
GO:0010188 response to microbial phytotoxin 8
GO:0010193 response to ozone 58
GO:0010196 nonphotochemical quenching 4
GO:0010200 response to chitin 26
GO:0010202 response to low fluence red light stimulus 4
GO:0010213 non-photoreactive DNA repair 2
GO:0010221 negative regulation of vernalization response 4
GO:0010224 response to UV-B 2
GO:0010225 response to UV-C 2
GO:0010226 response to lithium ion 16
GO:0010266 response to vitamin B1 28
GO:0010272 response to silver ion 2
GO:0010273 detoxification of copper ion 32
GO:0010286 heat acclimation 6
GO:0010288 response to lead ion 2
GO:0010299 detoxification of cobalt ion 4
GO:0010315 auxin efflux 2
GO:0010363 regulation of plant-type hypersensitive response 2
GO:0010378 temperature compensation of the circadian clock 2
GO:0010421 hydrogen peroxide-mediated programmed cell death 6
GO:0010446 response to alkaline pH 4
GO:0010447 response to acidic pH 2
GO:0010555 response to mannitol 2
GO:0010569 regulation of double-strand break repair via homologous recombination 30
GO:0014070 response to organic cyclic compound 4
GO:0016036 cellular response to phosphate starvation 2
GO:0016045 detection of bacterium 10
GO:0016048 detection of temperature stimulus 2
GO:0019430 removal of superoxide radicals 2
GO:0019722 calcium-mediated signaling 4
GO:0030433 ubiquitin-dependent ERAD pathway 2
GO:0030845 phospholipase C-inhibiting G protein-coupled receptor signaling pathway 12
GO:0030968 endoplasmic reticulum unfolded protein response 6
GO:0031000 response to caffeine 72
GO:0031001 response to brefeldin A 6
GO:0031348 negative regulation of defense response 4
GO:0031567 mitotic cell size control checkpoint signaling 4
GO:0031668 cellular response to extracellular stimulus 4
GO:0031930 mitochondria-nucleus signaling pathway 4
GO:0032008 positive regulation of TOR signaling 4
GO:0032012 regulation of ARF protein signal transduction 6
GO:0032025 response to cobalt ion 4
GO:0032055 negative regulation of translation in response to stress 2
GO:0032107 regulation of response to nutrient levels 2
GO:0032491 detection of molecule of fungal origin 8
GO:0032497 detection of lipopolysaccharide 4
GO:0033194 response to hydroperoxide 4
GO:0033198 response to ATP 8
GO:0033274 response to vitamin B2 2
GO:0033554 cellular response to stress 10
GO:0033591 response to L-ascorbic acid 2
GO:0033683 nucleotide-excision repair, DNA incision 8
GO:0033993 response to lipid 10
GO:0034051 negative regulation of plant-type hypersensitive response 2
GO:0034059 response to anoxia 2
GO:0034224 cellular response to zinc ion starvation 2
GO:0034263 positive regulation of autophagy in response to ER overload 6
GO:0034286 response to maltose 4
GO:0034599 cellular response to oxidative stress 2
GO:0034605 cellular response to heat 2
GO:0034620 cellular response to unfolded protein 14
GO:0034976 response to endoplasmic reticulum stress 8
GO:0035024 negative regulation of Rho protein signal transduction 2
GO:0035556 intracellular signal transduction 4
GO:0035865 cellular response to potassium ion 4
GO:0035874 cellular response to copper ion starvation 2
GO:0036297 interstrand cross-link repair 28
GO:0042178 xenobiotic catabolic process 6
GO:0042221 response to chemical 6
GO:0042276 error-prone translesion synthesis 8
GO:0042538 hyperosmotic salinity response 2
GO:0042542 response to hydrogen peroxide 8
GO:0042594 response to starvation 2
GO:0042631 cellular response to water deprivation 14
GO:0042742 defense response to bacterium 10
GO:0043153 entrainment of circadian clock by photoperiod 6
GO:0043157 response to cation stress 2
GO:0043201 response to leucine 6
GO:0043407 negative regulation of MAP kinase activity 4
GO:0043410 positive regulation of MAPK cascade 2
GO:0043481 anthocyanin accumulation in tissues in response to UV light 2
GO:0043562 cellular response to nitrogen levels 2
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 2
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0045087 innate immune response 6
GO:0045088 regulation of innate immune response 2
GO:0045089 positive regulation of innate immune response 2
GO:0045471 response to ethanol 26
GO:0045739 positive regulation of DNA repair 2
GO:0046677 response to antibiotic 4
GO:0046685 response to arsenic-containing substance 8
GO:0046686 response to cadmium ion 4
GO:0046688 response to copper ion 46
GO:0046898 response to cycloheximide 8
GO:0047484 regulation of response to osmotic stress 2
GO:0048015 phosphatidylinositol-mediated signaling 10
GO:0048016 inositol phosphate-mediated signaling 2
GO:0048571 long-day photoperiodism 2
GO:0048572 short-day photoperiodism 2
GO:0048573 photoperiodism, flowering 2
GO:0048574 long-day photoperiodism, flowering 2
GO:0048575 short-day photoperiodism, flowering 2
GO:0048576 positive regulation of short-day photoperiodism, flowering 2
GO:0048577 negative regulation of short-day photoperiodism, flowering 4
GO:0048584 positive regulation of response to stimulus 2
GO:0048585 negative regulation of response to stimulus 2
GO:0048586 regulation of long-day photoperiodism, flowering 2
GO:0048587 regulation of short-day photoperiodism, flowering 10
GO:0050691 regulation of defense response to virus by host 2
GO:0050826 response to freezing 2
GO:0050829 defense response to Gram-negative bacterium 12
GO:0050832 defense response to fungus 4
GO:0050982 detection of mechanical stimulus 10
GO:0051103 DNA ligation involved in DNA repair 14
GO:0051214 RNAi-mediated antiviral immunity against RNA virus 18
GO:0051365 cellular response to potassium ion starvation 4
GO:0051607 defense response to virus 20
GO:0051716 cellular response to stimulus 8
GO:0051776 detection of redox state 2
GO:0051841 positive regulation by host of cytolysis of symbiont cells 14
GO:0055121 response to high fluence blue light stimulus by blue high-fluence system 10
GO:0060416 response to growth hormone 8
GO:0061760 antifungal innate immune response 2
GO:0070370 cellular heat acclimation 2
GO:0070417 cellular response to cold 4
GO:0070482 response to oxygen levels 2
GO:0070716 mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication 2
GO:0070887 cellular response to chemical stimulus 6
GO:0071000 response to magnetism 2
GO:0071215 cellular response to abscisic acid stimulus 6
GO:0071217 cellular response to external biotic stimulus 14
GO:0071219 cellular response to molecule of bacterial origin 2
GO:0071226 cellular response to molecule of fungal origin 2
GO:0071230 cellular response to amino acid stimulus 2
GO:0071248 cellular response to metal ion 2
GO:0071249 cellular response to nitrate 4
GO:0071258 cellular response to gravity 4
GO:0071260 cellular response to mechanical stimulus 4
GO:0071277 cellular response to calcium ion 8
GO:0071287 cellular response to manganese ion 4
GO:0071289 cellular response to nickel ion 24
GO:0071291 cellular response to selenium ion 4
GO:0071294 cellular response to zinc ion 14
GO:0071323 cellular response to chitin 10
GO:0071332 cellular response to fructose stimulus 4
GO:0071345 cellular response to cytokine stimulus 4
GO:0071360 cellular response to exogenous dsRNA 4
GO:0071370 cellular response to gibberellin stimulus 2
GO:0071395 cellular response to jasmonic acid stimulus 2
GO:0071398 cellular response to fatty acid 4
GO:0071446 cellular response to salicylic acid stimulus 2
GO:0071452 cellular response to singlet oxygen 4
GO:0071454 cellular response to anoxia 2
GO:0071456 cellular response to hypoxia 54
GO:0071461 cellular response to redox state 8
GO:0071472 cellular response to salt stress 2
GO:0071475 cellular hyperosmotic salinity response 4
GO:0071490 cellular response to far red light 78
GO:0071492 cellular response to UV-A 2
GO:0071493 cellular response to UV-B 2
GO:0071494 cellular response to UV-C 2
GO:0071497 cellular response to freezing 6
GO:0071585 detoxification of cadmium ion 2
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system 8
GO:0071712 ER-associated misfolded protein catabolic process 4
GO:0071722 detoxification of arsenic-containing substance 2
GO:0071731 response to nitric oxide 4
GO:0071732 cellular response to nitric oxide 2
GO:0072423 response to DNA damage checkpoint signaling 8
GO:0072708 response to sorbitol 2
GO:0072710 response to hydroxyurea 8
GO:0072722 response to amitrole 10
GO:0072732 cellular response to calcium ion starvation 6
GO:0072756 cellular response to paraquat 4
GO:0080027 response to herbivore 28
GO:0080036 regulation of cytokinin-activated signaling pathway 4
GO:0080037 negative regulation of cytokinin-activated signaling pathway 18
GO:0080038 positive regulation of cytokinin-activated signaling pathway 22
GO:0080040 positive regulation of cellular response to phosphate starvation 10
GO:0080135 regulation of cellular response to stress 2
GO:0080167 response to karrikin 10
GO:0080169 cellular response to boron-containing substance deprivation 2
GO:0080183 response to photooxidative stress 40
GO:0080184 response to phenylpropanoid 4
GO:0090227 regulation of red or far-red light signaling pathway 8
GO:0090228 positive regulation of red or far-red light signaling pathway 8
GO:0090548 response to nitrate starvation 4
GO:0090549 response to carbon starvation 2
GO:0097305 response to alcohol 6
GO:0097468 programmed cell death in response to reactive oxygen species 2
GO:0097501 stress response to metal ion 2
GO:0097510 base-excision repair, AP site formation via deaminated base removal 2
GO:0098542 defense response to other organism 12
GO:0098754 detoxification 6
GO:0098755 maintenance of seed dormancy by absisic acid 4
GO:0098869 cellular oxidant detoxification 10
GO:0140426 PAMP-triggered immunity signalling pathway 6
GO:1900034 regulation of cellular response to heat 4
GO:1900037 regulation of cellular response to hypoxia 6
GO:1900039 positive regulation of cellular response to hypoxia 6
GO:1900067 regulation of cellular response to alkaline pH 100
GO:1900070 negative regulation of cellular hyperosmotic salinity response 6
GO:1900150 regulation of defense response to fungus 18
GO:1900367 positive regulation of defense response to insect 6
GO:1900424 regulation of defense response to bacterium 6
GO:1900425 negative regulation of defense response to bacterium 8
GO:1900426 positive regulation of defense response to bacterium 4
GO:1900457 regulation of brassinosteroid mediated signaling pathway 8
GO:1900458 negative regulation of brassinosteroid mediated signaling pathway 2
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 2
GO:1901001 negative regulation of response to salt stress 14
GO:1901181 negative regulation of cellular response to caffeine 2
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 6
GO:1901528 hydrogen peroxide mediated signaling pathway involved in stomatal movement 4
GO:1901672 positive regulation of systemic acquired resistance 4
GO:1901698 response to nitrogen compound 2
GO:1901700 response to oxygen-containing compound 8
GO:1902065 response to L-glutamate 4
GO:1902074 response to salt 6
GO:1902288 regulation of defense response to oomycetes 74
GO:1902289 negative regulation of defense response to oomycetes 10
GO:1902290 positive regulation of defense response to oomycetes 4
GO:1902446 regulation of shade avoidance 12
GO:1902584 positive regulation of response to water deprivation 2
GO:1903034 regulation of response to wounding 10
GO:1903842 response to arsenite ion 2
GO:1904263 positive regulation of TORC1 signaling 6
GO:1904292 regulation of ERAD pathway 4
GO:1904294 positive regulation of ERAD pathway 8
GO:1904383 response to sodium phosphate 14
GO:1904975 response to bleomycin 2
GO:1905034 regulation of antifungal innate immune response 12
GO:1905168 positive regulation of double-strand break repair via homologous recombination 2
GO:1905582 response to mannose 14
GO:1905957 regulation of cellular response to alcohol 2
GO:1990110 callus formation 2
GO:1990359 stress response to zinc ion 2
GO:1990532 stress response to nickel ion 6
GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane 132
GO:2000022 regulation of jasmonic acid mediated signaling pathway 8
GO:2000028 regulation of photoperiodism, flowering 4
GO:2000030 regulation of response to red or far red light 2
GO:2000031 regulation of salicylic acid mediated signaling pathway 6
GO:2000042 negative regulation of double-strand break repair via homologous recombination 6
GO:2000071 regulation of defense response by callose deposition 8
GO:2000306 positive regulation of photomorphogenesis 4
GO:2000685 positive regulation of cellular response to X-ray 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001