Functional clusters

Information

  • Type Gene Ontology
  • Description defense response

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aegilops tauschii 2D 3 CH_ata_389 7 9 0.000643028
Amborella trichopoda AmTr_v1.0_scaffold00061 3 CH_atr_170 11 24 0.000018256
Calamus simplicifolius scaffold81 3 CH_calsi_334 6 7 0.000942378
Cenchrus purpureus GWHAORA00000002 3 CH_cpu_549 17 50 0.000023022
Cenchrus purpureus GWHAORA00000003 3 CH_cpu_803 9 14 0.000328356
Cenchrus purpureus GWHAORA00000007 3 CH_cpu_880 7 8 0.000571902
Digitaria exilis Dexi_CM05836_chrUA 3 CH_dex_197 11 15 0.0000000317866
Digitaria exilis Dexi_CM05836_chr02A 3 CH_dex_214 20 67 0.0000000680353
Digitaria exilis Dexi_CM05836_chr08A 3 CH_dex_29 26 47 1.64014e-19
Eragrostis curvula 2 3 CH_ecu_725 13 39 0.000249781
Eragrostis curvula Contig30 3 CH_ecu_742 6 6 0.000328288
Elaeis guineensis EG5.1_Chr2 3 CH_egu_121 7 7 0.0000353641
Hordeum vulgare chr5H 3 CH_hvu_103 10 11 0.00000000162228
Hordeum vulgare chr1H 3 CH_hvu_171 13 29 0.000000266624
Hordeum vulgare chr6H 3 CH_hvu_257 15 53 0.0000145237
Musa acuminata chr03 3 CH_mac_7 22 25 4.61753e-21
Magnolia biondii Chr18 3 CH_mbi_21 30 66 6.12081e-19
Magnolia biondii Chr13 3 CH_mbi_454 10 19 0.0000647174
Magnolia biondii Chr16 3 CH_mbi_463 8 11 0.0000781826
Magnolia biondii Chr15 3 CH_mbi_602 9 17 0.000409557
Miscanthus sinensis Chr18 3 CH_msi_519 14 49 0.000572959
Miscanthus sinensis Chr13 3 CH_msi_92 11 12 0.000000000532553
Oryza alta GWHAZTO00000019 3 CH_oal_256 9 13 0.000000562145
Oryza alta GWHAZTO00000011 3 CH_oal_272 12 30 0.000000971557
Oryza alta GWHAZTO00000012 3 CH_oal_283 7 7 0.00000115858
Oryza alta GWHAZTO00000023 3 CH_oal_293 14 46 0.00000139647
Oryza alta GWHAZTO00000015 3 CH_oal_430 6 6 0.0000422883
Oryza alta GWHAZTO00000023 3 CH_oal_46 23 68 0.0000000000000271426
Oryza alta GWHAZTO00000001 3 CH_oal_646 7 11 0.000346983
Oryza alta GWHAZTO00000011 3 CH_oal_99 13 22 0.000000000191935
Oryza brachyantha 11 3 CH_obr_107 20 80 0.00000112537
Oryza sativa ssp. indica Chr1 3 CH_osaindica_300 6 6 0.000151936
Oryza sativa Kitaake Chr11 3 CH_osak_120 14 22 0.00000000177017
Oryza sativa Kitaake Chr7 3 CH_osak_139 10 11 0.0000000179502
Oryza sativa Kitaake Chr1 3 CH_osak_322 8 11 0.000114756
Oryza sativa ssp. japonica chr07 3 CH_osa_68 11 11 0.0000000000892599
Populus trichocarpa Chr05 3 CH_ptr_133 26 63 0.000000000115775
Populus trichocarpa Chr17 3 CH_ptr_294 12 20 0.0000134989
Sorghum bicolor Chr08 3 CH_sbi_361 6 6 0.000244034
Secale cereale GWHASIY00000004 3 CH_sce_251 13 23 0.000000401743
Sequoiadendron giganteum chr5 3 CH_sgi_1188 14 33 0.000262367
Sequoiadendron giganteum chr2 3 CH_sgi_294 18 24 0.00000000000173609
Solanum lycopersicum SL4.0ch07 3 CH_sly_215 8 9 0.00000115066
Solanum lycopersicum SL4.0ch04 3 CH_sly_297 10 20 0.0000241124
Solanum lycopersicum SL4.0ch05 3 CH_sly_321 8 12 0.0000571918
Solanum lycopersicum SL4.0ch04 3 CH_sly_68 21 52 0.00000000000215295
Saccharum spontaneum Chr7C 3 CH_ssp_1004 8 12 0.000605752
Saccharum spontaneum Chr6C 3 CH_ssp_471 8 9 0.0000124499
Triticum aestivum Chr1B 3 CH_tae_1003 16 46 0.0000559028
Triticum aestivum Chr7A 3 CH_tae_1053 7 7 0.000100789
Triticum aestivum Chr1D 3 CH_tae_1159 19 71 0.000217466
Triticum aestivum Chr2A 3 CH_tae_1397 7 8 0.000770094
Triticum aestivum Chr6B 3 CH_tae_144 24 43 0.00000000000000360244
Triticum aestivum Chr5B 3 CH_tae_307 18 32 0.000000000152762
Triticum aestivum Chr4A 3 CH_tae_40 30 44 1.1856e-23
Triticum aestivum Chr3A 3 CH_tae_424 11 12 0.0000000079896
Triticum aestivum Chr3B 3 CH_tae_677 22 73 0.000000890853
Triticum aestivum Chr7A 3 CH_tae_885 12 22 0.0000142756
Triticum dicoccoides 4A 3 CH_tdi_10 27 40 6.12994e-22
Triticum dicoccoides 6B 3 CH_tdi_105 12 13 0.0000000000992643
Triticum dicoccoides 2A 3 CH_tdi_199 11 15 0.000000194388
Triticum dicoccoides 3A 3 CH_tdi_232 9 10 0.00000073567
Triticum dicoccoides 1B 3 CH_tdi_31 30 71 1.36497e-16
Triticum dicoccoides 3B 3 CH_tdi_50 18 24 0.00000000000000875916
Triticum dicoccoides 7A 3 CH_tdi_597 16 59 0.000614294
Triticum dicoccoides 3B 3 CH_tdi_72 13 14 0.00000000000502133
Triticum dicoccoides 2B 3 CH_tdi_81 18 31 0.00000000000976714
Triticum turgidum chr3B 3 CH_ttu_147 13 16 0.000000000720163
Triticum turgidum chr3B 3 CH_ttu_222 12 17 0.0000000424865
Triticum turgidum chr5B 3 CH_ttu_313 13 23 0.00000103772
Triticum turgidum chr3A 3 CH_ttu_337 9 10 0.00000187483
Triticum turgidum chr1B 3 CH_ttu_352 22 77 0.00000270217
Zoysia japonica ssp. nagirizaki Zjn_sc00080.1 3 CH_zjn_262 14 78 0.000747152
Aegilops tauschii 2D 4 CH_ata_389 7 9 0.000643028
Amborella trichopoda AmTr_v1.0_scaffold00061 4 CH_atr_170 11 24 0.000018256
Calamus simplicifolius scaffold81 4 CH_calsi_334 6 7 0.000942378
Cenchrus purpureus GWHAORA00000002 4 CH_cpu_549 17 50 0.000023022
Cenchrus purpureus GWHAORA00000003 4 CH_cpu_803 9 14 0.000328356
Cenchrus purpureus GWHAORA00000007 4 CH_cpu_880 7 8 0.000571902
Digitaria exilis Dexi_CM05836_chrUA 4 CH_dex_197 11 15 0.0000000317866
Digitaria exilis Dexi_CM05836_chr02A 4 CH_dex_214 20 67 0.0000000680353
Digitaria exilis Dexi_CM05836_chr08A 4 CH_dex_29 26 47 1.64014e-19
Eragrostis curvula 2 4 CH_ecu_725 13 39 0.000249781
Eragrostis curvula Contig30 4 CH_ecu_742 6 6 0.000328288
Elaeis guineensis EG5.1_Chr2 4 CH_egu_121 7 7 0.0000353641
Hordeum vulgare chr5H 4 CH_hvu_103 10 11 0.00000000162228
Hordeum vulgare chr1H 4 CH_hvu_171 13 29 0.000000266624
Hordeum vulgare chr6H 4 CH_hvu_257 15 53 0.0000145237
Musa acuminata chr03 4 CH_mac_7 22 25 4.61753e-21
Magnolia biondii Chr18 4 CH_mbi_21 30 66 6.12081e-19
Magnolia biondii Chr13 4 CH_mbi_454 10 19 0.0000647174
Magnolia biondii Chr16 4 CH_mbi_463 8 11 0.0000781826
Magnolia biondii Chr15 4 CH_mbi_602 9 17 0.000409557
Miscanthus sinensis Chr18 4 CH_msi_519 14 49 0.000572959
Miscanthus sinensis Chr13 4 CH_msi_92 11 12 0.000000000532553
Oryza alta GWHAZTO00000019 4 CH_oal_256 9 13 0.000000562145
Oryza alta GWHAZTO00000011 4 CH_oal_272 12 30 0.000000971557
Oryza alta GWHAZTO00000012 4 CH_oal_283 7 7 0.00000115858
Oryza alta GWHAZTO00000023 4 CH_oal_293 14 46 0.00000139647
Oryza alta GWHAZTO00000015 4 CH_oal_430 6 6 0.0000422883
Oryza alta GWHAZTO00000023 4 CH_oal_46 23 68 0.0000000000000271426
Oryza alta GWHAZTO00000001 4 CH_oal_646 7 11 0.000346983
Oryza alta GWHAZTO00000011 4 CH_oal_99 13 22 0.000000000191935
Oryza brachyantha 11 4 CH_obr_107 20 80 0.00000112537
Oryza sativa ssp. indica Chr1 4 CH_osaindica_300 6 6 0.000151936
Oryza sativa Kitaake Chr11 4 CH_osak_120 14 22 0.00000000177017
Oryza sativa Kitaake Chr7 4 CH_osak_139 10 11 0.0000000179502
Oryza sativa Kitaake Chr1 4 CH_osak_322 8 11 0.000114756
Oryza sativa ssp. japonica chr07 4 CH_osa_68 11 11 0.0000000000892599
Populus trichocarpa Chr05 4 CH_ptr_133 26 63 0.000000000115775
Populus trichocarpa Chr17 4 CH_ptr_294 12 20 0.0000134989
Sorghum bicolor Chr08 4 CH_sbi_361 6 6 0.000244034
Secale cereale GWHASIY00000004 4 CH_sce_251 13 23 0.000000401743
Sequoiadendron giganteum chr5 4 CH_sgi_1188 14 33 0.000262367
Sequoiadendron giganteum chr2 4 CH_sgi_294 18 24 0.00000000000173609
Solanum lycopersicum SL4.0ch07 4 CH_sly_215 8 9 0.00000115066
Solanum lycopersicum SL4.0ch04 4 CH_sly_297 10 20 0.0000241124
Solanum lycopersicum SL4.0ch05 4 CH_sly_321 8 12 0.0000571918
Solanum lycopersicum SL4.0ch04 4 CH_sly_68 21 52 0.00000000000215295
Saccharum spontaneum Chr7C 4 CH_ssp_1004 8 12 0.000605752
Saccharum spontaneum Chr6C 4 CH_ssp_471 8 9 0.0000124499
Triticum aestivum Chr1B 4 CH_tae_1003 16 46 0.0000559028
Triticum aestivum Chr7A 4 CH_tae_1053 7 7 0.000100789
Triticum aestivum Chr1D 4 CH_tae_1159 19 71 0.000217466
Triticum aestivum Chr2A 4 CH_tae_1397 7 8 0.000770094
Triticum aestivum Chr6B 4 CH_tae_144 24 43 0.00000000000000360244
Triticum aestivum Chr5B 4 CH_tae_307 18 32 0.000000000152762
Triticum aestivum Chr4A 4 CH_tae_40 30 44 1.1856e-23
Triticum aestivum Chr3A 4 CH_tae_424 11 12 0.0000000079896
Triticum aestivum Chr3B 4 CH_tae_677 22 73 0.000000890853
Triticum aestivum Chr7A 4 CH_tae_885 12 22 0.0000142756
Triticum dicoccoides 4A 4 CH_tdi_10 27 40 6.12994e-22
Triticum dicoccoides 6B 4 CH_tdi_105 12 13 0.0000000000992643
Triticum dicoccoides 2A 4 CH_tdi_199 11 15 0.000000194388
Triticum dicoccoides 3A 4 CH_tdi_232 9 10 0.00000073567
Triticum dicoccoides 1B 4 CH_tdi_31 30 71 1.36497e-16
Triticum dicoccoides 3B 4 CH_tdi_50 18 24 0.00000000000000875916
Triticum dicoccoides 7A 4 CH_tdi_597 16 59 0.000614294
Triticum dicoccoides 3B 4 CH_tdi_72 13 14 0.00000000000502133
Triticum dicoccoides 2B 4 CH_tdi_81 18 31 0.00000000000976714
Triticum turgidum chr3B 4 CH_ttu_147 13 16 0.000000000720163
Triticum turgidum chr3B 4 CH_ttu_222 12 17 0.0000000424865
Triticum turgidum chr5B 4 CH_ttu_313 13 23 0.00000103772
Triticum turgidum chr3A 4 CH_ttu_337 9 10 0.00000187483
Triticum turgidum chr1B 4 CH_ttu_352 22 77 0.00000270217
Zoysia japonica ssp. nagirizaki Zjn_sc00080.1 4 CH_zjn_262 14 78 0.000747152

Available child term results

Ontology identifier Description Number of clusters
GO:0002213 defense response to insect 28
GO:0002215 defense response to nematode 6
GO:0002220 innate immune response activating cell surface receptor signaling pathway 6
GO:0002229 defense response to oomycetes 4
GO:0002230 positive regulation of defense response to virus by host 14
GO:0002679 respiratory burst involved in defense response 10
GO:0002752 cell surface pattern recognition receptor signaling pathway 4
GO:0002758 innate immune response-activating signal transduction 8
GO:0009627 systemic acquired resistance 6
GO:0009682 induced systemic resistance 2
GO:0009861 jasmonic acid and ethylene-dependent systemic resistance 6
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 4
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 2
GO:0009871 jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway 18
GO:0010112 regulation of systemic acquired resistance 42
GO:0010186 positive regulation of cellular defense response 4
GO:0010363 regulation of plant-type hypersensitive response 2
GO:0031348 negative regulation of defense response 4
GO:0034051 negative regulation of plant-type hypersensitive response 2
GO:0042742 defense response to bacterium 10
GO:0045087 innate immune response 6
GO:0045088 regulation of innate immune response 2
GO:0045089 positive regulation of innate immune response 2
GO:0050691 regulation of defense response to virus by host 2
GO:0050829 defense response to Gram-negative bacterium 12
GO:0050832 defense response to fungus 4
GO:0051214 RNAi-mediated antiviral immunity against RNA virus 18
GO:0051607 defense response to virus 20
GO:0051841 positive regulation by host of cytolysis of symbiont cells 14
GO:0061760 antifungal innate immune response 2
GO:0098542 defense response to other organism 12
GO:0140426 PAMP-triggered immunity signalling pathway 6
GO:1900150 regulation of defense response to fungus 18
GO:1900367 positive regulation of defense response to insect 6
GO:1900424 regulation of defense response to bacterium 6
GO:1900425 negative regulation of defense response to bacterium 8
GO:1900426 positive regulation of defense response to bacterium 4
GO:1901672 positive regulation of systemic acquired resistance 4
GO:1902288 regulation of defense response to oomycetes 74
GO:1902289 negative regulation of defense response to oomycetes 10
GO:1902290 positive regulation of defense response to oomycetes 4
GO:1905034 regulation of antifungal innate immune response 12
GO:2000071 regulation of defense response by callose deposition 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001